RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FAM149B1Q96BN6 582 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 HERPUD2Q9BSE4 406 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 CARD9Q9H257 536 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 ZWILCHQ9H900 591 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 CHST7Q9NS84 486 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 RBM12Q9NTZ6 932 aaKnown RBP21.09■□□□□ 0.97
CLN3-250ENST00000636839 PI4K2BG5E9Z4 385 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 PAFAH1B1P43034 410 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 PGFP49763 221 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 ATXN1P54253 815 aaKnown RBP21.08■□□□□ 0.97
CLN3-250ENST00000636839 RWDD2BP57060 319 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 HTRA4P83105 476 aaPredicted RBP21.08■□□□□ 0.97
CLN3-250ENST00000636839 SMTNL2Q2TAL5 461 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 ANKS3Q6ZW76 656 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 BHLHA9Q7RTU4 235 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 RHOT1Q8IXI2 618 aa21.08■□□□□ 0.97
CLN3-250ENST00000636839 OR6C75A6NL08 312 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 CES2O00748 559 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 FYNP06241 537 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 MIPP30301 263 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 SLC25A11Q02978 314 aaKnown RBP21.07■□□□□ 0.96
CLN3-250ENST00000636839 CKAP4Q07065 602 aaKnown RBP21.07■□□□□ 0.96
CLN3-250ENST00000636839 SYPL2Q5VXT5 272 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 ZDHHC14Q8IZN3 488 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 DEFB106AQ8N104 65 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 FBXO22Q8NEZ5 403 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 ACTRT1Q8TDG2 376 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 TMEM169Q96HH4 297 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 PEBP4Q96S96 227 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 CNPY3Q9BT09 278 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 SPG21Q9NZD8 308 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 PTPRDP23468 1912 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 LAMA3Q16787 3333 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 EFCAB8A8MWE9 144 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 LAG3P18627 525 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 DAOAP59103 153 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 ELF2Q15723 593 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 KIAA1841Q6NSI8 718 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 PSRC1Q6PGN9 363 aaPredicted RBP21.07■□□□□ 0.96
CLN3-250ENST00000636839 HERC6Q8IVU3 1022 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 HERVK_113Q902F9 699 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 RNF25Q96BH1 459 aaPredicted RBP21.07■□□□□ 0.96
CLN3-250ENST00000636839 UBXN6Q9BZV1 441 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 NAALADL1Q9UQQ1 740 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 PCDHB5Q9Y5E4 795 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 SLC4A7Q9Y6M7 1214 aa21.07■□□□□ 0.96
CLN3-250ENST00000636839 MTMR11A4FU01 709 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 TNFRSF10BO14763 440 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 ZBED1O96006 694 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 DNAJB2P25686 324 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 OR1D2P34982 312 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 TERF1P54274 439 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 GPR17Q13304 367 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 PSMD5Q16401 504 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 NFE2Q16621 373 aaPredicted RBP21.06■□□□□ 0.96
CLN3-250ENST00000636839 ZNF572Q7Z3I7 529 aaPredicted RBP21.06■□□□□ 0.96
CLN3-250ENST00000636839 SPRED2Q7Z698 418 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 RAPGEF5Q92565 580 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 HINFPQ9BQA5 517 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 CLSTN3Q9BQT9 956 aa21.06■□□□□ 0.96
CLN3-250ENST00000636839 NGRNQ9NPE2 291 aaKnown RBP21.06■□□□□ 0.96
CLN3-250ENST00000636839 WDR27A2RRH5 827 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 H7C4K7 107 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 PGRMC1O00264 195 aaKnown RBP21.05■□□□□ 0.96
CLN3-250ENST00000636839 PSTPIP1O43586 416 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 SOD2P04179 222 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 SDC4P31431 198 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 YWHAZP63104 245 aaKnown RBP21.05■□□□□ 0.96
CLN3-250ENST00000636839 DUSP4Q13115 394 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 DCAF6Q58WW2 860 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 EFHC1Q5JVL4 640 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 FIBCD1Q8N539 461 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 FAM172AQ8WUF8 416 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 HTATIP2Q9BUP3 242 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 MTRRQ9UBK8 725 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 ATP2A2P16615 1042 aaKnown RBP21.05■□□□□ 0.96
CLN3-250ENST00000636839 SLC5A3P53794 718 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 LONRF2Q1L5Z9 754 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 CYP4V2Q6ZWL3 525 aaPredicted RBP21.05■□□□□ 0.96
CLN3-250ENST00000636839 VPS52Q8N1B4 723 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 PIK3R5Q8WYR1 880 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 UBXN4Q92575 508 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 EDEM1Q92611 657 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 GOLGA1Q92805 767 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 ABHD8Q96I13 439 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 C11orf84Q9BUA3 381 aaPredicted RBP21.05■□□□□ 0.96
CLN3-250ENST00000636839 HEMGNQ9BXL5 484 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 MAGEB5Q9BZ81 275 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 PLEKHA4Q9H4M7 779 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 CNGB3Q9NQW8 809 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 ASNSD1Q9NWL6 643 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 INSL6Q9Y581 213 aa21.05■□□□□ 0.96
CLN3-250ENST00000636839 DPYSL4O14531 572 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 CSPG5O95196 566 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 RHOXF2BP0C7M4 288 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 MYOGP15173 224 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 HDAC4P56524 1084 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 USP46P62068 366 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 ROR1Q01973 937 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 C9orf50Q5SZB4 431 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms