RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ZC3H14Q6PJT7 736 aaKnown RBP13.41□□□□□ -0.26
PNKP-217ENST00000625216 SV2AQ7L0J3 742 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 RALGPS2Q86X27 583 aaPredicted RBP13.41□□□□□ -0.26
PNKP-217ENST00000625216 GPIHBP1Q8IV16 184 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 TMEM139Q8IV31 216 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 LRRC8AQ8IWT6 810 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 NEK11Q8NG66 645 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 LMO3Q8TAP4 145 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 TNIP3Q96KP6 325 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 NUP58Q9BVL2 599 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 ELOVL4Q9GZR5 314 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 INTS2Q9H0H0 1204 aaKnown RBP13.41□□□□□ -0.26
PNKP-217ENST00000625216 TMEM8AQ9HCN3 771 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 PLCB1Q9NQ66 1216 aa13.41□□□□□ -0.26
PNKP-217ENST00000625216 PMM2O15305 246 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 P4HA2O15460 535 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 STX10O60499 249 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 VNN1O95497 513 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 USP17L7P0C7H9 530 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 GTF2H1P32780 548 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 NOP14P78316 857 aaKnown RBP13.4□□□□□ -0.26
PNKP-217ENST00000625216 TXNDC8Q6A555 127 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 TRIM65Q6PJ69 517 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 DENND5BQ6ZUT9 1274 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 B3GALNT2Q8NCR0 500 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 BAP1Q92560 729 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 SEMA4DQ92854 862 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 USP13Q92995 863 aaPredicted RBP13.4□□□□□ -0.26
PNKP-217ENST00000625216 TTLL2Q9BWV7 592 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 CHRDQ9H2X0 955 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 LMAN1LQ9HAT1 526 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 GKN1Q9NS71 199 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.4□□□□□ -0.26
PNKP-217ENST00000625216 CAPN11Q9UMQ6 739 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 NDRG2Q9UN36 371 aaKnown RBP13.4□□□□□ -0.26
PNKP-217ENST00000625216 COQ4Q9Y3A0 265 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 FHOD1Q9Y613 1164 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 F5P12259 2224 aa13.4□□□□□ -0.26
PNKP-217ENST00000625216 ATP8B3O60423 1300 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 TRAV19A0A0A6YYK7 116 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 PRR23AA6NEV1 266 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 SPECC1L-ADORA2AF8WAN1 911 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 TADA3O75528 432 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 ASS1P00966 412 aaKnown RBP13.39□□□□□ -0.27
PNKP-217ENST00000625216 TPM1P09493 284 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 FECHP22830 423 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 KRT9P35527 623 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 CDH8P55286 799 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 AMPD2Q01433 879 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 LRRC32Q14392 662 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 PPP2R5DQ14738 602 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 ITPRIPL2Q3MIP1 535 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 KLHDC7AQ5VTJ3 777 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 E4F1Q66K89 784 aaPredicted RBP13.39□□□□□ -0.27
PNKP-217ENST00000625216 KRT39Q6A163 491 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 CC2D1AQ6P1N0 951 aaPredicted RBP13.39□□□□□ -0.27
PNKP-217ENST00000625216 GJB7Q6PEY0 223 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 ASCL5Q7RTU5 278 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 UNC93AQ86WB7 457 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 CNGA4Q8IV77 575 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 MAML2Q8IZL2 1156 aaPredicted RBP13.39□□□□□ -0.27
PNKP-217ENST00000625216 TAS1R2Q8TE23 839 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 IQCDQ96DY2 449 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 FAM83CQ9BQN1 747 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 FAM126AQ9BYI3 521 aaPredicted RBP13.39□□□□□ -0.27
PNKP-217ENST00000625216 IMPG2Q9BZV3 1241 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 SMG9Q9H0W8 520 aaKnown RBP13.39□□□□□ -0.27
PNKP-217ENST00000625216 ABHD10Q9NUJ1 306 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 TRPM5Q9NZQ8 1165 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 PYCARDQ9ULZ3 195 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 NME7Q9Y5B8 376 aa13.39□□□□□ -0.27
PNKP-217ENST00000625216 F8VP50 259 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 CLSTN1O94985 981 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 CHRNB1P11230 501 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 TCF3P15923 654 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 HDCP19113 662 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 CTHP32929 405 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 POLR2FP61218 127 aaKnown RBP13.38□□□□□ -0.27
PNKP-217ENST00000625216 ZBED6P86452 979 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 RUNX3Q13761 415 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 PDGFRLQ15198 375 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 DGKKQ5KSL6 1271 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 ARHGEF19Q8IW93 802 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 CRYBG2Q8N1P7 616 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 SYNPOQ8N3V7 929 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 KIAA1958Q8N8K9 716 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 EHBP1Q8NDI1 1231 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 STKLD1Q8NE28 680 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 FAXDC2Q96IV6 333 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 ZFYVE19Q96K21 471 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 PANX2Q96RD6 677 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 DNAJC7Q99615 494 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 B3GNT5Q9BYG0 378 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 EDEM3Q9BZQ6 932 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 DNAI2Q9GZS0 605 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 DPEP3Q9H4B8 488 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 SMYD3Q9H7B4 428 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 CYP3A43Q9HB55 503 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 NLRC4Q9NPP4 1024 aa13.38□□□□□ -0.27
PNKP-217ENST00000625216 GTSE1Q9NYZ3 720 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms