RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RGS7P49802 495 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 PABPC1LQ4VXU2 614 aaKnown RBP20.77■□□□□ 0.92
UPF3A-211ENST00000618700 TDRD12Q587J7 1177 aaKnown RBP20.77■□□□□ 0.92
UPF3A-211ENST00000618700 GAREM2Q75VX8 874 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 RIPOR3Q96MK2 946 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 WDR6Q9NNW5 1121 aaKnown RBP20.77■□□□□ 0.92
UPF3A-211ENST00000618700 ARHGAP20Q9P2F6 1191 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 UXTQ9UBK9 157 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-211ENST00000618700 MAGED2Q9UNF1 606 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-211ENST00000618700 ZNF638Q14966 1978 aaKnown RBP20.76■□□□□ 0.91
UPF3A-211ENST00000618700 MBTPS2O43462 519 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 F11P03951 625 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 PLEKP08567 350 aaPredicted RBP20.76■□□□□ 0.91
UPF3A-211ENST00000618700 YWHAQP27348 245 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 ACADSBP45954 432 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 ADIGQ0VDE8 80 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 TAF12Q16514 161 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 CLEC16AQ2KHT3 1053 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 SLC5A9Q2M3M2 681 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 PTPN20Q4JDL3 420 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 PRSS36Q5K4E3 855 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 ATAT1Q5SQI0 421 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 NAA35Q5VZE5 725 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 TMEM150AQ86TG1 271 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 TMEM110Q86TL2 294 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 SPC24Q8NBT2 197 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.76■□□□□ 0.91
UPF3A-211ENST00000618700 NECTIN4Q96NY8 510 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 CPXM1Q96SM3 734 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 FBXO44Q9H4M3 255 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 LRRC4Q9HBW1 653 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 THEGQ9P2T0 379 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 SCML2Q9UQR0 700 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 NCANO14594 1321 aa20.76■□□□□ 0.91
UPF3A-211ENST00000618700 DDX3XO00571 662 aaKnown RBP eCLIP20.75■□□□□ 0.913e-7■■■■□ 19.9
UPF3A-211ENST00000618700 MOSPD3O75425 235 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 FGF19O95750 216 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 UNGP13051 313 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-211ENST00000618700 TKTL1P51854 596 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 CDK17Q00537 523 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 CENPCQ03188 943 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 TSR1Q2NL82 804 aaKnown RBP20.75■□□□□ 0.91
UPF3A-211ENST00000618700 CYP4A22Q5TCH4 519 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 PM20D1Q6GTS8 502 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 PDZD4Q76G19 769 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-211ENST00000618700 BHLHA9Q7RTU4 235 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 CCDC186Q7Z3E2 898 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 SCML4Q8N228 414 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 SLC30A5Q8TAD4 765 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 SHKBP1Q8TBC3 707 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 OVCA2Q8WZ82 227 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 FBXO32Q969P5 355 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 TCEAL4Q96EI5 215 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 NOX5Q96PH1 765 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 PANX2Q96RD6 677 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 ULBP1Q9BZM6 244 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 POMKQ9H5K3 350 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 ZNHIT6Q9NWK9 470 aaKnown RBP20.75■□□□□ 0.91
UPF3A-211ENST00000618700 OBSL1O75147 1896 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 MYO16Q9Y6X6 1858 aa20.75■□□□□ 0.91
UPF3A-211ENST00000618700 E5RJQ4 531 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 ZBED1O96006 694 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 MYL4P12829 197 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 TNFAIP3P21580 790 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 FECHP22830 423 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 GABRR2P28476 465 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 CDC25CP30307 473 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 TFF2Q03403 129 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 IFRD2Q12894 506 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-211ENST00000618700 TAF10Q12962 218 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 CBX2Q14781 532 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-211ENST00000618700 SIX6OS1Q8N1H7 587 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 PPP1R13BQ96KQ4 1090 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 CNGB3Q9NQW8 809 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 ST7Q9NRC1 585 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 SEPT11Q9NVA2 429 aaKnown RBP20.74■□□□□ 0.91
UPF3A-211ENST00000618700 TJP2Q9UDY2 1190 aa20.74■□□□□ 0.91
UPF3A-211ENST00000618700 SSU72P8A0A1W2PR75 194 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 ZNF197O14709 1029 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 FBXO21O94952 628 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 ERBB2P04626 1255 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 ZDHHC11BP0C7U3 371 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 LCP1P13796 627 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 ASTE1Q2TB18 679 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-211ENST00000618700 MAMSTRQ6ZN01 415 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 PDZD8Q8NEN9 1154 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 ITFG1Q8TB96 612 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 CPA5Q8WXQ8 436 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 SLITRK1Q96PX8 696 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 CHP1Q99653 195 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 GMIPQ9P107 970 aa20.73■□□□□ 0.91
UPF3A-211ENST00000618700 A0A1W2PRU2 124 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 PIK3R2O00459 728 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 PAPSS1O43252 624 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-211ENST00000618700 USP17L7P0C7H9 530 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 CEBPBP17676 345 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 MMP8P22894 467 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 FSHRP23945 695 aa20.72■□□□□ 0.91
UPF3A-211ENST00000618700 EIF4A3P38919 411 aaKnown RBP20.72■□□□□ 0.91
UPF3A-211ENST00000618700 GABRB2P47870 512 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms