RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 NT5C1BQ96P26 610 aa16.92■□□□□ 0.3
BRCA1-228ENST00000618469 MED15Q96RN5 788 aa16.92■□□□□ 0.3
BRCA1-228ENST00000618469 DDX23Q9BUQ8 820 aaKnown RBP16.92■□□□□ 0.3
BRCA1-228ENST00000618469 LTB4R2Q9NPC1 389 aa16.92■□□□□ 0.3
BRCA1-228ENST00000618469 TRPV5Q9NQA5 729 aa16.92■□□□□ 0.3
BRCA1-228ENST00000618469 ZNF840PA6NDX5 716 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 TNFRSF10BO14763 440 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PMM2O15305 246 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 P4HA2O15460 535 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 TBXAS1P24557 533 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PPP3CCP48454 512 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PDE6CP51160 858 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 RAD23BP54727 409 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 YWHAEP62258 255 aaKnown RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PLCB2Q00722 1185 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 KCNH2Q12809 1159 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 USP4Q13107 963 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 TPD52L1Q16890 204 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 ZNF528Q3MIS6 628 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PPP1R26Q5T8A7 1209 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 ZNF852Q6ZMS4 543 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PPM1KQ8N3J5 372 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 SLC4A11Q8NBS3 891 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 PDZD8Q8NEN9 1154 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 TTC8Q8TAM2 541 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 TMEM176AQ96HP8 235 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 HEXIM2Q96MH2 286 aaKnown RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 CYP2S1Q96SQ9 504 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 FAM124BQ9H5Z6 455 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 CSNK1G1Q9HCP0 422 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 THG1LQ9NWX6 298 aaKnown RBP16.91■□□□□ 0.3
BRCA1-228ENST00000618469 GCNT4Q9P109 453 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 DACH1Q9UI36 760 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 FBXO4Q9UKT5 387 aa16.91■□□□□ 0.3
BRCA1-228ENST00000618469 HDCP19113 662 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 TGM1P22735 817 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 TARSP26639 723 aaKnown RBP16.9■□□□□ 0.3
BRCA1-228ENST00000618469 SOX9P48436 509 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 KPNA1P52294 538 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-228ENST00000618469 TNK2Q07912 1038 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 SPEM2Q0P670 501 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 MTF1Q14872 753 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 ZNF77Q15935 545 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 CC2D1AQ6P1N0 951 aaPredicted RBP16.9■□□□□ 0.3
BRCA1-228ENST00000618469 GPRIN1Q7Z2K8 1008 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 OVCA2Q8WZ82 227 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 ZSCAN32Q9NX65 697 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 GTSE1Q9NYZ3 720 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 GMIPQ9P107 970 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 NDRG2Q9UN36 371 aaKnown RBP16.9■□□□□ 0.3
BRCA1-228ENST00000618469 MRPS17Q9Y2R5 130 aaKnown RBP16.9■□□□□ 0.3
BRCA1-228ENST00000618469 PCDHGA2Q9Y5H1 932 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.9■□□□□ 0.3
BRCA1-228ENST00000618469 RALGAPA1Q6GYQ0 2036 aa16.9■□□□□ 0.3
BRCA1-228ENST00000618469 OAS1P00973 400 aaKnown RBP16.89■□□□□ 0.29
BRCA1-228ENST00000618469 PFKLP17858 780 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 TRIM68Q6AZZ1 485 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 UBR7Q8N806 425 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 ZBTB44Q8NCP5 570 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 SH3RF2Q8TEC5 729 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 KAT5Q92993 513 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 SECISBP2LQ93073 1101 aaKnown RBP16.89■□□□□ 0.29
BRCA1-228ENST00000618469 INTS2Q9H0H0 1204 aaKnown RBP16.89■□□□□ 0.29
BRCA1-228ENST00000618469 ARHGAP26Q9UNA1 814 aa16.89■□□□□ 0.29
BRCA1-228ENST00000618469 SHISA7A6NL88 538 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 MAN2B1O00754 1011 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 CYP26A1O43174 497 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 OLFM2O95897 454 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 MBL2P11226 248 aaPredicted RBP16.88■□□□□ 0.29
BRCA1-228ENST00000618469 CD19P15391 556 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 MTIF2P46199 727 aaKnown RBP16.88■□□□□ 0.29
BRCA1-228ENST00000618469 LMNB2Q03252 620 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 GOLGA7BQ2TAP0 167 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 ARHGEF19Q8IW93 802 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 LMO3Q8TAP4 145 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 FAM3CQ92520 227 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 MSANTD3Q96H12 275 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 DUSP16Q9BY84 665 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 EPC1Q9H2F5 836 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 FBXO44Q9H4M3 255 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 EBF3Q9H4W6 596 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 PNPLA8Q9NP80 782 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 GKN1Q9NS71 199 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 COMMD8Q9NX08 183 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 SMPD4Q9NXE4 827 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 IL37Q9NZH6 218 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 CPQQ9Y646 472 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 ZFHX4Q86UP3 3567 aa16.88■□□□□ 0.29
BRCA1-228ENST00000618469 CFAP47Q6ZTR5 3102 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 FAM92AA1XBS5 289 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 HHLA1C9JL84 531 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 SPECC1L-ADORA2AF8WAN1 911 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 LILRB5O75023 590 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 MBD3O95983 291 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 ARSAP15289 507 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 ACO1P21399 889 aaKnown RBP16.87■□□□□ 0.29
BRCA1-228ENST00000618469 ERCC5P28715 1186 aaPredicted RBP16.87■□□□□ 0.29
BRCA1-228ENST00000618469 CTHP32929 405 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 IFNAR2P48551 515 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 SLC7A9P82251 487 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms