RNA–Protein interactions for RNA: ENST00000604516.1

HMGN3-AS1-201, HMGN3 antisense RNA 1, humanhuman

TSL 1 (best) BASIC

Gene HMGN3-AS1, Length 2,946 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-AS1-201ENST00000604516 HOXA11P31270 313 aaPredicted RBP12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ELK3P41970 407 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ELF3P78545 371 aaPredicted RBP12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 POU5F1BQ06416 359 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PCGF5Q86SE9 256 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ECHDC2Q86YB7 292 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 IFNLR1Q8IU57 520 aaPredicted RBP12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PDIK1LQ8N165 341 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ANKLE1Q8NAG6 615 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 CLEC4CQ8WTT0 213 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KATNBL1Q9H079 304 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ECT2Q9H8V3 914 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ITGA11Q9UKX5 1188 aa12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 MYO18AQ92614 2054 aaKnown RBP12.32□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 AKAP5P24588 427 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PCK1P35558 622 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 GSCP56915 257 aaPredicted RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 NCALDP61601 193 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ROR1Q01973 937 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KRT81Q14533 505 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 EFHC2Q5JST6 749 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 DPP9Q86TI2 863 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 AGGF1Q8N302 714 aaeCLIP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ATP11CQ8NB49 1132 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 FAM172AQ8WUF8 416 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KHSRPQ92945 711 aaKnown RBP eCLIP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 GBA2Q9HCG7 927 aaPredicted RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 C2CD2Q9Y426 696 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 TYROBPO43914 113 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 YARSP54577 528 aaKnown RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SPARCL1Q14515 664 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PRAMEF19Q5SWL8 479 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 LVRNQ6Q4G3 990 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PLD5Q8N7P1 536 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 OSMRQ99650 979 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KLHL14Q9P2G3 628 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ZMYND8Q9ULU4 1186 aaPredicted RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PHTF1Q9UMS5 762 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 NR2E3Q9Y5X4 410 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 BTBD19C9JJ37 291 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KCNN4O15554 427 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PAPSS1O43252 624 aaPredicted RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ENDOD1O94919 500 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ADRA1DP25100 572 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 NOMO1Q15155 1222 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 GALNTL6Q49A17 601 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 OLFML1Q6UWY5 402 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SHCBP1Q8NEM2 672 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 OR6B3Q8NGW1 331 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 LENG1Q96BZ8 264 aaPredicted RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 RNF157Q96PX1 679 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 TRIM56Q9BRZ2 755 aaKnown RBP12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 USP29Q9HBJ7 922 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 RAB6BQ9NRW1 208 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KLK14Q9P0G3 267 aa12.31□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PRPF4O43172 522 aaKnown RBP eCLIP12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 RBL1P28749 1068 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 NR1H3Q13133 447 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ZNF618Q5T7W0 954 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 HHATQ5VTY9 493 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 CATSPER4Q7RTX7 472 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SESTD1Q86VW0 696 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 CEP57Q86XR8 500 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PQLC3Q8N755 202 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 NETO2Q8NC67 525 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PCDH19Q8TAB3 1148 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 FAF2Q96CS3 445 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 NXF3Q9H4D5 531 aaKnown RBP12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ACSS3Q9H6R3 686 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 VTA1Q9NP79 307 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SLC17A7Q9P2U7 560 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 BAIAP2L1Q9UHR4 511 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SLC24A2Q9UI40 661 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KBTBD13C9JR72 458 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 E7ESA3 106 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 IGF2BP3O00425 579 aaKnown RBP eCLIP12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 FAM155BO75949 473 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 MMP3P08254 477 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 GSTA1P08263 222 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 CCDC130P13994 396 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 LMO2P25791 158 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 MSH2P43246 934 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 GTF2A1P52655 376 aaPredicted RBP12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 BNIP1Q12981 228 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ACAP1Q15027 740 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SNCBQ16143 134 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 LDLRAD1Q5T700 205 aa12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 SNRNP25Q9BV90 132 aaKnown RBP12.3□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 DOCK3Q8IZD9 2030 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 TCRBV9S1A1TA0A576 114 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 F5H423 210 aaPredicted RBP12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 ADORA2BP29275 332 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 PHBP35232 272 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 BCAR1P56945 870 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 YWHAGP61981 247 aaKnown RBP eCLIP12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 CCNA1P78396 465 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 RNASELQ05823 741 aaKnown RBP12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 E2F5Q15329 346 aa12.29□□□□□ -0.44
HMGN3-AS1-201ENST00000604516 KBTBD12Q3ZCT8 623 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms