RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TAF3Q5VWG9 929 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 SNX30Q5VWJ9 437 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 PM20D1Q6GTS8 502 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 IRF2BP2Q7Z5L9 587 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 MON1AQ86VX9 555 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 GPIHBP1Q8IV16 184 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 ZSWIM3Q96MP5 696 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 SLC4A5Q9BY07 1137 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 SLC46A2Q9BY10 475 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 NUCKS1Q9H1E3 243 aaKnown RBP20.37■□□□□ 0.85
UPF1-209ENST00000600310 PDCL3Q9H2J4 239 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 GMIPQ9P107 970 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 CHORDC1Q9UHD1 332 aaPredicted RBP20.37■□□□□ 0.85
UPF1-209ENST00000600310 CEP83Q9Y592 693 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 GREB1Q4ZG55 1949 aa20.37■□□□□ 0.85
UPF1-209ENST00000600310 TNFRSF10AO00220 468 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 MMEP08473 750 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 CHRNB2P17787 502 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 PFKLP17858 780 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 ACADSBP45954 432 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 ZBED6P86452 979 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 ADIGQ0VDE8 80 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 TRIM14Q14142 442 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 SFMBT2Q5VUG0 894 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 TXNDC8Q6A555 127 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 PASD1Q8IV76 773 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 SCML4Q8N228 414 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 ZNF397Q8NF99 534 aaPredicted RBP20.36■□□□□ 0.85
UPF1-209ENST00000600310 SLC20A1Q8WUM9 679 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 ULBP1Q9BZM6 244 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 SLITRK6Q9H5Y7 841 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 CYLDQ9NQC7 956 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 CNGB3Q9NQW8 809 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 CYTH4Q9UIA0 394 aa20.36■□□□□ 0.85
UPF1-209ENST00000600310 ANHXE9PGG2 379 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 ZBED1O96006 694 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 USP17L7P0C7H9 530 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 WEE1P30291 646 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 FMO1Q01740 532 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 PDCLQ13371 301 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 ASIC2Q16515 512 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 FAM78AQ5JUQ0 283 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 E4F1Q66K89 784 aaPredicted RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 TMEM110Q86TL2 294 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 GJD3Q8N144 294 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 SIX6OS1Q8N1H7 587 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 MAB21L3Q8N8X9 362 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 TMEM35BQ8NCS4 154 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 C1orf131Q8NDD1 294 aaKnown RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 ZSCAN18Q8TBC5 510 aaPredicted RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 CPLX3Q8WVH0 158 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 SYN2Q92777 582 aaPredicted RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 ASB16Q96NS5 453 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 NECAB3Q96P71 396 aaPredicted RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 TLR8Q9NR97 1041 aaKnown RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 LIMD1Q9UGP4 676 aa20.35■□□□□ 0.85
UPF1-209ENST00000600310 LUC7L2Q9Y383 392 aaKnown RBP20.35■□□□□ 0.85
UPF1-209ENST00000600310 PATJQ8NI35 1801 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 LSM8O95777 96 aaKnown RBP20.34■□□□□ 0.85
UPF1-209ENST00000600310 ABL1P00519 1130 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 LCP1P13796 627 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 PRKCIP41743 596 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 PGFP49763 221 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 PSEN1P49768 467 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 TUBP50607 506 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 ZNF75DP51815 510 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 TRIM72Q6ZMU5 477 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 SCD5Q86SK9 330 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 CMTM8Q8IZV2 173 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 SMARCD2Q92925 531 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 NXPE3Q969Y0 559 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 MRFAP1L1Q96HT8 127 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 NOX5Q96PH1 765 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 UHRF1Q96T88 793 aaPredicted RBP20.34■□□□□ 0.85
UPF1-209ENST00000600310 TRPV4Q9HBA0 871 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 ST7Q9NRC1 585 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 XIRP2A4UGR9 3374 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 MYH10P35580 1976 aa20.34■□□□□ 0.85
UPF1-209ENST00000600310 TCF20Q9UGU0 1960 aaKnown RBP20.34■□□□□ 0.85
UPF1-209ENST00000600310 DOCK8Q8NF50 2099 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 TRAV19A0A0A6YYK7 116 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 C2orf78A6NCI8 922 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 FBXO21O94952 628 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 OLFM2O95897 454 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 OAS1P00973 400 aaKnown RBP20.33■□□□□ 0.85
UPF1-209ENST00000600310 CYP1A1P04798 512 aaPredicted RBP20.33■□□□□ 0.85
UPF1-209ENST00000600310 CASP14P31944 242 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 DAOAP59103 153 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 HTR4Q13639 388 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 MTSS1LQ765P7 747 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 BHLHA9Q7RTU4 235 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 ARID3BQ8IVW6 561 aaPredicted RBP20.33■□□□□ 0.85
UPF1-209ENST00000600310 ARHGAP18Q8N392 663 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 IRGQQ8WZA9 623 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 NDRG1Q92597 394 aaKnown RBP20.33■□□□□ 0.85
UPF1-209ENST00000600310 PPP1R13BQ96KQ4 1090 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 CPXM1Q96SM3 734 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 AGPAT1Q99943 283 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 SYT11Q9BT88 431 aa20.33■□□□□ 0.85
UPF1-209ENST00000600310 NMUR1Q9HB89 426 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms