RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CACTINQ8WUQ7 758 aaKnown RBP9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 HMGB4Q8WW32 186 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 MMS19Q96T76 1030 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 TRIM9Q9C026 710 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 ZNF518BQ9C0D4 1074 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 CD93Q9NPY3 652 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM9BQ9NQ34 198 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 PANK4Q9NVE7 773 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 INTS13Q9NVM9 706 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 EBF1Q9UH73 591 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 ZMYM5Q9UJ78 669 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 MMP17Q9ULZ9 603 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 TCRBV21S2A2A0A5A6 115 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 MAP3K13O43283 966 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 SLC26A4O43511 780 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 EIF5BO60841 1220 aaKnown RBP9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 ADAM23O75077 832 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 PRB1P04280 392 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 DLATP10515 647 aaKnown RBP9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 IRF1P10914 325 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 GAP43P17677 238 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 GARTP22102 1010 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 SCP2P22307 547 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 ITPKAP23677 461 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 PCSK1P29120 753 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 CASP1P29466 404 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 STAT6P42226 847 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 LHX1P48742 406 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 PGFP49763 221 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 FAM193AP78312 1265 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 TAF10Q12962 218 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 RESTQ13127 1097 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 NR1H3Q13133 447 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 ORC1Q13415 861 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 TRIM61Q5EBN2 209 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 DAB2IPQ5VWQ8 1189 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 RHBDF2Q6PJF5 856 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 DENND5BQ6ZUT9 1274 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 BRAPQ7Z569 592 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 MIB1Q86YT6 1006 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 ADGRG2Q8IZP9 1017 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 PGBD3Q8N328 593 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 GPD1LQ8N335 351 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 FSIP1Q8NA03 581 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 HVCN1Q96D96 273 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 ANKRD36BP1Q96IX9 119 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 CNOT6LQ96LI5 555 aaKnown RBP9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 TRPM5Q9NZQ8 1165 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 BCCIPQ9P287 314 aaKnown RBP eCLIP9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 CDH9Q9ULB4 789 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 EXOC7Q9UPT5 735 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 CEP192Q8TEP8 1941 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 PCNX2A6NKB5 2137 aa9.22□□□□□ -0.93
SHKBP1-220ENST00000599716 URB1O60287 2271 aaKnown RBP9.21□□□□□ -0.93
SHKBP1-220ENST00000599716 J3QKU1 62 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CLIC2O15247 247 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 KAT7O95251 611 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 BMP15O95972 392 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 LDHAP00338 332 aaKnown RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 TNNC2P02585 160 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 NTRK1P04629 796 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 MBL2P11226 248 aaPredicted RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 ENGP17813 658 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CSRP1P21291 193 aaKnown RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 ANXA13P27216 316 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 P2RY2P41231 377 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 MAGEA11P43364 429 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 KIR2DL1P43626 348 aaPredicted RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CASP4P49662 377 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CYP2J2P51589 502 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 LY6G5CQ5SRR4 150 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SCARA5Q6ZMJ2 495 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 C4orf50Q6ZRC1 276 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 TRAPPC11Q7Z392 1133 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 LIMS2Q7Z4I7 341 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 NELFCDQ8IXH7 590 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 OR6B3Q8NGW1 331 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SCAMP5Q8TAC9 235 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 OLIG1Q8TAK6 271 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 MYCBPAPQ8TBZ2 947 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CCDC127Q96BQ5 260 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 FUBP3Q96I24 572 aaKnown RBP eCLIP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 LRIG1Q96JA1 1093 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SPATA17Q96L03 361 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 USP28Q96RU2 1077 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 UBL7Q96S82 380 aaPredicted RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 KCNK16Q96T55 309 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 GTPBP2Q9BX10 602 aaKnown RBP9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 B3GNT5Q9BYG0 378 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SLC6A17Q9H1V8 727 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CCSER2Q9H7U1 834 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SCUBE2Q9NQ36 999 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 ARHGEF4Q9NR80 690 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 OLFML3Q9NRN5 406 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 HSPBP1Q9NZL4 362 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 SEL1LQ9UBV2 794 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 STK17AQ9UEE5 414 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CCDC39Q9UFE4 941 aa9.21□□□□□ -0.94
SHKBP1-220ENST00000599716 CHORDC1Q9UHD1 332 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms