RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TRAF3IP3Q9Y228 551 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 SH3BP1Q9Y3L3 701 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 SCAMP3O14828 347 aaKnown RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 MAPK13O15264 365 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 COCHO43405 550 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 ASS1P00966 412 aaKnown RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 HLA-DRAP01903 254 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 PRR29P0C7W0 189 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 FAM200BP0CF97 657 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 RPL13P26373 211 aaKnown RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 OPRD1P41143 372 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 EIF2DP41214 584 aaKnown RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 ASPAP45381 313 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 TUBP50607 506 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 DGKEP52429 567 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 MAP3K7CLP57077 242 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 DPYDQ12882 1025 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 ORC1Q13415 861 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 ELF2Q15723 593 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 NFIL3Q16649 462 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 SPOPLQ6IQ16 392 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 KBTBD6Q86V97 674 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 FAM186BQ8IYM0 893 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 ADGRG2Q8IZP9 1017 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 FUKQ8N0W3 1084 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 SCAMP5Q8TAC9 235 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 SLC2A14Q8TDB8 520 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 OTUB2Q96DC9 234 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 CHAMP1Q96JM3 812 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 PNKPQ96T60 521 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 ARRDC1-AS1Q9H2J1 176 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 FBXO44Q9H4M3 255 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 MMRN2Q9H8L6 949 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.38□□□□□ -0.755e-6■■■■■ 65.2
VRK3-216ENST00000599342 FAM49BQ9NUQ9 324 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 GMIPQ9P107 970 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 EBF1Q9UH73 591 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 CHORDC1Q9UHD1 332 aaPredicted RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 MAPK8IP1Q9UQF2 711 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 ZDHHC9Q9Y397 364 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 EP300Q09472 2414 aaPredicted RBP10.38□□□□□ -0.75
VRK3-216ENST00000599342 DMXL1Q9Y485 3027 aa10.38□□□□□ -0.75
VRK3-216ENST00000599342 FAM237AA0A1B0GTK4 181 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 A0A1W2PQ27 194 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 A0A1W2PQ64 194 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 A0A1W2PQD8 194 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 E2F8A0AVK6 867 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 DCDC2BA2VCK2 349 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 TNFRSF10BO14763 440 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 SLC30A4O14863 429 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 RHOBTB1O94844 696 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 EPN2O95208 641 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 APODP05090 189 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 TRIM49P0CI25 452 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 TRIM49CP0CI26 452 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 ADH5P11766 374 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 ADORA2BP29275 332 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 GBP1P32455 592 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 PSMC2P35998 433 aaKnown RBP10.37□□□□□ -0.75
VRK3-216ENST00000599342 GCLMP48507 274 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 MRPS21P82921 87 aaKnown RBP10.37□□□□□ -0.75
VRK3-216ENST00000599342 GAD2Q05329 585 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 GOLGA8FQ08AF8 430 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 GOLGA8DPQ0D2H9 430 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 PREPLQ4J6C6 727 aaPredicted RBP10.37□□□□□ -0.75
VRK3-216ENST00000599342 C2orf27AQ580R0 203 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 SNX30Q5VWJ9 437 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 BTBD8Q5XKL5 378 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 KRBA2Q6ZNG9 492 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 PAQR9Q6ZVX9 377 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 CRYBG2Q8N1P7 616 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 GUF1Q8N442 669 aaKnown RBP10.37□□□□□ -0.75
VRK3-216ENST00000599342 USP33Q8TEY7 942 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 SMOQ99835 787 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 NT5C1AQ9BXI3 368 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 CCSER2Q9H7U1 834 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 TLR8Q9NR97 1041 aaKnown RBP10.37□□□□□ -0.75
VRK3-216ENST00000599342 HMGXB4Q9UGU5 601 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 PCDHGA5Q9Y5G8 931 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 GPR179Q6PRD1 2367 aa10.37□□□□□ -0.75
VRK3-216ENST00000599342 FRYLO94915 3013 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 FAM92AA1XBS5 289 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 K7EQS6 105 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 TLR5O60602 858 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 BEST1O76090 585 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 ALDH1A2O94788 518 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 ZNF202O95125 648 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 KAT7O95251 611 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 ZNF806P0C7X5 589 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 IRF1P10914 325 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 MPLP40238 635 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 KDSRQ06136 332 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 ENPEPQ07075 957 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 INCA1Q0VD86 236 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 ADAM9Q13443 819 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 CCDC6Q16204 474 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 GAB4Q2WGN9 574 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 PLK5Q496M5 336 aa10.36□□□□□ -0.75
VRK3-216ENST00000599342 HSF5Q4G112 596 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms