RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CYP17A1P05093 508 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 MBL2P11226 248 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 GRIA2P42262 883 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 AFMP43652 599 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 PXNP49023 591 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 GAD2Q05329 585 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 STK4Q13043 487 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 BYSLQ13895 437 aaKnown RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 CRY1Q16526 586 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 GAB4Q2WGN9 574 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 TRMT11Q7Z4G4 463 aaKnown RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 FAM35AQ86V20 835 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 FBXO32Q969P5 355 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 CCDC47Q96A33 483 aaKnown RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 PAGE5Q96GU1 130 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 KCTD10Q9H3F6 313 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 DPEP3Q9H4B8 488 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 FAM124BQ9H5Z6 455 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 PNPLA8Q9NP80 782 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 POLMQ9NP87 494 aaPredicted RBP14.44□□□□□ -0.1
TRIM28-211ENST00000597968 TRAF3IP3Q9Y228 551 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 FRMD4BQ9Y2L6 1034 aa14.44□□□□□ -0.1
TRIM28-211ENST00000597968 HELZP42694 1942 aaKnown RBP14.43□□□□□ -0.1
TRIM28-211ENST00000597968 CALUO43852 315 aaPredicted RBP14.43□□□□□ -0.1
TRIM28-211ENST00000597968 ABL1P00519 1130 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 CASP1P29466 404 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 SLC5A3P53794 718 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 CACNA2D1P54289 1103 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 EOGTQ5NDL2 527 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 PMS2CLQ68D20 193 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 RHBDF2Q6PJF5 856 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 KIAA0895Q8NCT3 520 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 TTC16Q8NEE8 873 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 CHAMP1Q96JM3 812 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 IMPG2Q9BZV3 1241 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 TMEM30AQ9NV96 361 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 CFAP97Q9P2B7 532 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 SERTAD1Q9UHV2 236 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 SH3BP1Q9Y3L3 701 aa14.43□□□□□ -0.1
TRIM28-211ENST00000597968 NCOR2Q9Y618 2525 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 FAM237AA0A1B0GTK4 181 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 BCLAF3A2AJT9 711 aaKnown RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 HOXC11O43248 304 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 COCHO43405 550 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 GDF9O60383 454 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 KAT7O95251 611 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 ASS1P00966 412 aaKnown RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 NR3C1P04150 777 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 ADH5P11766 374 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 CASP4P49662 377 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 MCCD1P59942 119 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 GOLGA8FQ08AF8 430 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 GOLGA8DPQ0D2H9 430 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 KMT5BQ4FZB7 885 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 STPG1Q5TH74 334 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 BTBD8Q5XKL5 378 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 NAIF1Q69YI7 327 aaPredicted RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 KLHDC10Q6PID8 442 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 PAQR9Q6ZVX9 377 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 INTS8Q75QN2 995 aaKnown RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 FUKQ8N0W3 1084 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 ZNF276Q8N554 614 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 TTC39CQ8N584 583 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 OLIG1Q8TAK6 271 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 PLEKHO2Q8TD55 490 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 CCDC34Q96HJ3 373 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 ZFRQ96KR1 1074 aaKnown RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 KCNK16Q96T55 309 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 MED10Q9BTT4 135 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 SMYD3Q9H7B4 428 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 CYP3A43Q9HB55 503 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 TLR8Q9NR97 1041 aaKnown RBP14.42□□□□□ -0.1
TRIM28-211ENST00000597968 HPSEQ9Y251 543 aa14.42□□□□□ -0.1
TRIM28-211ENST00000597968 LAMA1P25391 3075 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 CLDN5O00501 218 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 AP1G2O75843 785 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 RHOBTB3O94955 611 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 VNN1O95497 513 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 CAVIN2O95810 425 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 RPL13P26373 211 aaKnown RBP14.41□□□□□ -0.1
TRIM28-211ENST00000597968 PSEN1P49768 467 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 CDH8P55286 799 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 KRT85P78386 507 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 DNM1Q05193 864 aaKnown RBP14.41□□□□□ -0.1
TRIM28-211ENST00000597968 INCA1Q0VD86 236 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 SF3A2Q15428 464 aaKnown RBP14.41□□□□□ -0.1
TRIM28-211ENST00000597968 C2orf27AQ580R0 203 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 HTR3DQ70Z44 454 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 SV2AQ7L0J3 742 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 TADA2BQ86TJ2 420 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 IL17RCQ8NAC3 791 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 WHAMMQ8TF30 809 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 SPACA7Q96KW9 195 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 HNRNPABQ99729 332 aaKnown RBP14.41□□□□□ -0.1
TRIM28-211ENST00000597968 LSM14BQ9BX40 385 aaKnown RBP14.41□□□□□ -0.1
TRIM28-211ENST00000597968 CYLDQ9NQC7 956 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 ARHGEF4Q9NR80 690 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 SPHK2Q9NRA0 654 aa14.41□□□□□ -0.1
TRIM28-211ENST00000597968 KRT82Q9NSB4 513 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms