RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TNFRSF10BO14763 440 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 FSCN2O14926 492 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 SART1O43290 800 aaKnown RBP15.39■□□□□ 0.05
VRK3-212ENST00000596814 LPXNO60711 386 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 USP17L7P0C7H9 530 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 CASQ1P31415 396 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 RFC1P35251 1148 aaPredicted RBP15.39■□□□□ 0.05
VRK3-212ENST00000596814 TUFMP49411 452 aaKnown RBP15.39■□□□□ 0.05
VRK3-212ENST00000596814 DAOAP59103 153 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 SDHAF4Q5VUM1 108 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 SLFN11Q7Z7L1 901 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 NUP93Q8N1F7 819 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 JOSD2Q8TAC2 188 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 ZNF592Q92610 1267 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 KLHL5Q96PQ7 755 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 CERS4Q9HA82 394 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 CYP4F11Q9HBI6 524 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 IP6K2Q9UHH9 426 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 TMEM59LQ9UK28 342 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 GREB1Q4ZG55 1949 aa15.39■□□□□ 0.05
VRK3-212ENST00000596814 FANCGO15287 622 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 GRAP2O75791 330 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 SEC24AO95486 1093 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 FTCDO95954 541 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 ZBED1O96006 694 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 ELF1P32519 619 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 RNASE9P60153 205 aaKnown RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 IFRD2Q12894 506 aaPredicted RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 TAF5Q15542 800 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 EFHC1Q5JVL4 640 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 CHRDL2Q6WN34 429 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 SCML4Q8N228 414 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 EMC1Q8N766 993 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 MRPL43Q8N983 215 aaKnown RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 SCAMP5Q8TAC9 235 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 MICAL1Q8TDZ2 1067 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 FNIP1Q8TF40 1166 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 NDRG1Q92597 394 aaKnown RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 FAM149B1Q96BN6 582 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 SPATA17Q96L03 361 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 NAPGQ99747 312 aaPredicted RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 SLC28A3Q9HAS3 691 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 RRAGDQ9NQL2 400 aaPredicted RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 ASNSD1Q9NWL6 643 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 MAFFQ9ULX9 164 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 JRKLQ9Y4A0 524 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 USP3Q9Y6I4 520 aa15.38■□□□□ 0.05
VRK3-212ENST00000596814 COL4A4P53420 1690 aaPredicted RBP15.38■□□□□ 0.05
VRK3-212ENST00000596814 ZNF638Q14966 1978 aaKnown RBP15.37■□□□□ 0.05
VRK3-212ENST00000596814 CTAGE9A4FU28 777 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 HIDE1A8MVS5 230 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PRRG1O14668 218 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 HSF2BPO75031 334 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PROSCO94903 275 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 GLI1P08151 1106 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 ATF6P18850 670 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 FLT3P36888 993 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 OGDHQ02218 1023 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 DENND5BQ6ZUT9 1274 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PEX26Q7Z412 305 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 STKLD1Q8NE28 680 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.37■□□□□ 0.05
VRK3-212ENST00000596814 ARNTL2Q8WYA1 636 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 IRGQQ8WZA9 623 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 CEP295NLQ96MC4 621 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 YIPF1Q9Y548 306 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 ATG2AQ2TAZ0 1938 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 C2CD4BA6NLJ0 364 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 TGM5O43548 720 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 DAB1O75553 588 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 RTN3O95197 1032 aaPredicted RBP15.37■□□□□ 0.05
VRK3-212ENST00000596814 GPD1P21695 349 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PSMA2P25787 234 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 KLRC2P26717 231 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 MAN1A1P33908 653 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 IRS1P35568 1242 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 ZNF252P-AS1Q0IIN9 211 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 CAMK1Q14012 370 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PTPROQ16827 1216 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PM20D1Q6GTS8 502 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 PDE12Q6L8Q7 609 aaKnown RBP15.37■□□□□ 0.05
VRK3-212ENST00000596814 ARCQ7LC44 396 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 NT5DC3Q86UY8 548 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 TCEAL8Q8IYN2 117 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 KIF18AQ8NI77 898 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 GPR152Q8TDT2 470 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 KHSRPQ92945 711 aaKnown RBP eCLIP15.37■□□□□ 0.05
VRK3-212ENST00000596814 FBXO44Q9H4M3 255 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 AMFRQ9UKV5 643 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 HYOU1Q9Y4L1 999 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 ALG6Q9Y672 507 aa15.37■□□□□ 0.05
VRK3-212ENST00000596814 CHD9Q3L8U1 2897 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 YJEFN3A6XGL0 299 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 E7ENQ6 273 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 ENC1O14682 589 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 SPOPO43791 374 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 GLUD1P00367 558 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 PDGFRAP16234 1089 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 COMTP21964 271 aa15.36■□□□□ 0.05
VRK3-212ENST00000596814 SLC1A1P43005 524 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms