RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 NCANO14594 1321 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 TICRRQ7Z2Z1 1910 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 ZNF840PA6NDX5 716 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 TULP2O00295 520 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 O00370 1275 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 FOXN3O00409 490 aaPredicted RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 ZNF263O14978 683 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 CYP26A1O43174 497 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 MBL2P11226 248 aaPredicted RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 SRFP11831 508 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 LCP1P13796 627 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 ZNF18P17022 549 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 PSMC3P17980 439 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 RFX1P22670 979 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 GNA15P30679 374 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 PPP3CCP48454 512 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 RGS7P49802 495 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 BCAT1P54687 386 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 BST2Q10589 180 aaKnown RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 DRAP1Q14919 205 aaPredicted RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 IQCB1Q15051 598 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 CNGA2Q16280 664 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 PIGZQ86VD9 579 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 MFSD6LQ8IWD5 586 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 CELF5Q8N6W0 485 aaKnown RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 PDZD8Q8NEN9 1154 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 USP13Q92995 863 aaPredicted RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 E2F7Q96AV8 911 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 ZFYVE19Q96K21 471 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 ZSWIM1Q9BR11 485 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 NACA2Q9H009 215 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 HSD3B7Q9H2F3 369 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 MFSD1Q9H3U5 465 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 TRPV4Q9HBA0 871 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 LRRC4Q9HBW1 653 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 TLR8Q9NR97 1041 aaKnown RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 FAM207AQ9NSI2 230 aaPredicted RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 TDP1Q9NUW8 608 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 COMMD8Q9NX08 183 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 CCL26Q9Y258 94 aa11.69□□□□□ -0.54
LIG1-211ENST00000596457 KIF26AQ9ULI4 1882 aaPredicted RBP11.69□□□□□ -0.54
LIG1-211ENST00000596457 A0A1W2PQH9 124 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 LGALS16A8MUM7 142 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 GOLGA6L19H0YKK7 550 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 XPO1O14980 1071 aaKnown RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 MED7O43513 233 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 SERPINC1P01008 464 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 PDGFBP01127 241 aaPredicted RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 AVPR2P30518 371 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 PGFP49763 221 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 TKTL1P51854 596 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 KIF11P52732 1056 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 ZNF132P52740 706 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 POLR2FP61218 127 aaKnown RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 PTK2Q05397 1052 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 SYCP1Q15431 976 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 STILQ15468 1287 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 FILIP1LQ4L180 1135 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 HECTD3Q5T447 861 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 LCLAT1Q6UWP7 414 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 SIX5Q8N196 739 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 NEK11Q8NG66 645 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 BPIFB1Q8TDL5 484 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 DEPDC1BQ8WUY9 529 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 OVCA2Q8WZ82 227 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 NDRG1Q92597 394 aaKnown RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 SECISBP2LQ93073 1101 aaKnown RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 LRRC3BQ96PB8 259 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 RNF38Q9H0F5 515 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 CCSER2Q9H7U1 834 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 NLRC4Q9NPP4 1024 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 THG1LQ9NWX6 298 aaKnown RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 SMPD4Q9NXE4 827 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 ZMYM5Q9UJ78 669 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 NAGPAQ9UK23 515 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 NUDT5Q9UKK9 219 aa11.68□□□□□ -0.54
LIG1-211ENST00000596457 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIG1-211ENST00000596457 ZFHX2Q9C0A1 2572 aaPredicted RBP11.68□□□□□ -0.54
LIG1-211ENST00000596457 FAM170AA1A519 330 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 TEX33O43247 280 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 GFRA3O60609 400 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 SETSIPP0DME0 302 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 IRF1P10914 325 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 UCHL3P15374 230 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 CLCN1P35523 988 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 PDE6CP51160 858 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 PTPN5P54829 565 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 ADIGQ0VDE8 80 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 SLC44A4Q53GD3 710 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 IER5LQ5T953 404 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 DPY19L2P1Q6NXN4 242 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 CC2D1AQ6P1N0 951 aaPredicted RBP11.67□□□□□ -0.54
LIG1-211ENST00000596457 DENND1BQ6P3S1 775 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 PASD1Q8IV76 773 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 SIX6OS1Q8N1H7 587 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 FLCNQ8NFG4 579 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 CSGALNACT1Q8TDX6 532 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 SH3RF2Q8TEC5 729 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 ZNF606Q8WXB4 792 aa11.67□□□□□ -0.54
LIG1-211ENST00000596457 SHC3Q92529 594 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms