RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRAV19A0A0A6YYK7 116 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SYN3O14994 580 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 USP17L7P0C7H9 530 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 RBP3P10745 1247 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 DEFB106AQ8N104 65 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 OR6P1Q8NGX9 317 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CSGALNACT1Q8TDX6 532 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CIPCQ9C0C6 399 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 CERS4Q9HA82 394 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SAYSD1Q9NPB0 183 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 SNX12Q9UMY4 172 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 AP4E1Q9UPM8 1137 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 ANGPTL3Q9Y5C1 460 aa10.24□□□□□ -0.77
LIG3-216ENST00000593099 A0A0U1RQF3 1178 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 PSTPIP1O43586 416 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 RGS20O76081 388 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 PROSCO94903 275 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 ATP1A1P05023 1023 aaKnown RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 HDCP19113 662 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 APBA1Q02410 837 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 PREPLQ4J6C6 727 aaPredicted RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 PIGZQ86VD9 579 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 XPO6Q96QU8 1125 aaKnown RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 IKZF4Q9H2S9 585 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 RRAGDQ9NQL2 400 aaPredicted RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 VPS28Q9UK41 221 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 SLC27A5Q9Y2P5 690 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 ARSEP51690 589 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 OXCT1P55809 520 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 ARHGEF7Q14155 803 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 RAB44Q7Z6P3 723 aaPredicted RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 SERINC5Q86VE9 423 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 NUP93Q8N1F7 819 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 TPCN2Q8NHX9 752 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 DEPDC1BQ8WUY9 529 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 POPDC2Q9HBU9 364 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 DNAJC17Q9NVM6 304 aaKnown RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 ARHGAP20Q9P2F6 1191 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 SLC25A13Q9UJS0 675 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 MYH1P12882 1939 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 E5RJQ4 531 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 SLC7A5Q01650 507 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 TWF1Q12792 350 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 NUGGCQ68CJ6 796 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 SDCCAG8Q86SQ7 713 aaPredicted RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 DAW1Q8N136 415 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 ANKRD42Q8N9B4 389 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 SHC3Q92529 594 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 CINPQ9BW66 212 aaPredicted RBP10.23□□□□□ -0.77
LIG3-216ENST00000593099 SMYD2Q9NRG4 433 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 FBXL21Q9UKT6 434 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 PLA2G4CQ9UP65 541 aa10.23□□□□□ -0.77
LIG3-216ENST00000593099 RNASEH1O60930 286 aaKnown RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 DHX34Q14147 1143 aaKnown RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 FAM187BQ17R55 369 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 SLC10A6Q3KNW5 377 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 ZBTB41Q5SVQ8 909 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 TMEM63BQ5T3F8 832 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 VSTM1Q6UX27 236 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 NOP9Q86U38 636 aaKnown RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 ZNF557Q8N988 423 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 KRT35Q92764 455 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 ACSF2Q96CM8 615 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 ARHGEF26Q96DR7 871 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 AGAP3Q96P47 875 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 TBCBQ99426 244 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 USP18Q9UMW8 372 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 EXOC1LA0A1B0GW35 172 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 FRMD3A2A2Y4 597 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 GSTA1P08263 222 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 GSTA2P09210 222 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 WEE1P30291 646 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 STX2P32856 288 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 CLCNKBP51801 687 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 PDCLQ13371 301 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 PHLDB3Q6NSJ2 640 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 FAM35AQ86V20 835 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 C1orf127Q8N9H9 656 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 TMA16Q96EY4 203 aaKnown RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 PCYT2Q99447 389 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 NFKBIZQ9BYH8 718 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 SIK3Q9Y2K2 1263 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 SQORQ9Y6N5 450 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 UBR3Q6ZT12 1888 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 GOLGA8MH3BSY2 632 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 CDC25CP30307 473 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 DMTNQ08495 405 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 MAPK7Q13164 816 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 LAMB3Q13751 1172 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 C6orf163Q5TEZ5 329 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 E4F1Q66K89 784 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 SLC39A5Q6ZMH5 540 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 FAM43BQ6ZT52 329 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 ANKLE1Q8NAG6 615 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 USP13Q92995 863 aaPredicted RBP10.22□□□□□ -0.77
LIG3-216ENST00000593099 APOL5Q9BWW9 433 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 GPATCH2LQ9NWQ4 482 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 TRIM10Q9UDY6 481 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 TAF1P21675 1872 aa10.22□□□□□ -0.77
LIG3-216ENST00000593099 MARSP56192 900 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms