RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 ARMC3Q5W041 872 aa8.56□□□□□ -1.04
VMP1-208ENST00000588617 B4GALNT4Q76KP1 1039 aa8.56□□□□□ -1.04
VMP1-208ENST00000588617 GPRIN1Q7Z2K8 1008 aa8.56□□□□□ -1.04
VMP1-208ENST00000588617 LSMEM1Q8N8F7 131 aa8.56□□□□□ -1.04
VMP1-208ENST00000588617 MARS2Q96GW9 593 aaKnown RBP8.56□□□□□ -1.04
VMP1-208ENST00000588617 ZNF668Q96K58 619 aaPredicted RBP8.56□□□□□ -1.04
VMP1-208ENST00000588617 KRTAP9-2Q9BYQ4 174 aa8.56□□□□□ -1.04
VMP1-208ENST00000588617 TRIM5Q9C035 493 aa8.56□□□□□ -1.04
VMP1-208ENST00000588617 AGO3Q9H9G7 860 aaKnown RBP8.56□□□□□ -1.04
VMP1-208ENST00000588617 GBA2Q9HCG7 927 aaPredicted RBP8.56□□□□□ -1.04
VMP1-208ENST00000588617 VWA3AA6NCI4 1184 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.55□□□□□ -1.04
VMP1-208ENST00000588617 KLK10O43240 276 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 DHHO43323 396 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 AHCYL1O43865 530 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 CER1O95813 267 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 PGM1P36871 562 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 MAGEA10P43363 369 aaPredicted RBP8.55□□□□□ -1.04
VMP1-208ENST00000588617 NPTX2P47972 431 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 ARF3P61204 181 aaPredicted RBP8.55□□□□□ -1.04
VMP1-208ENST00000588617 ARF1P84077 181 aaKnown RBP8.55□□□□□ -1.04
VMP1-208ENST00000588617 GPR68Q15743 365 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 CSRP2Q16527 193 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 BAK1Q16611 211 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 MFSD4BQ5TF39 518 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 TMCO3Q6UWJ1 677 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 TMEM108Q6UXF1 575 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 ENOSF1Q7L5Y1 443 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 ARMC8Q8IUR7 673 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 ZFPM1Q8IX07 1006 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 TBC1D22AQ8WUA7 517 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 KCNN1Q92952 543 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 GPR20Q99678 358 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 NUDT22Q9BRQ3 303 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 GHITMQ9H3K2 345 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 SMOC2Q9H3U7 446 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 CXorf36Q9H7Y0 433 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 HAUS2Q9NVX0 235 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 HSF4Q9ULV5 492 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 NOL7Q9UMY1 257 aaKnown RBP8.55□□□□□ -1.04
VMP1-208ENST00000588617 CLCA2Q9UQC9 943 aa8.55□□□□□ -1.04
VMP1-208ENST00000588617 TDRD9Q8NDG6 1382 aaKnown RBP8.54□□□□□ -1.04
VMP1-208ENST00000588617 C9orf118A6NHY6 69 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 PLOD3O60568 738 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 CSF1P09603 554 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 SPATA31D3P0C874 917 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 GNAT2P19087 354 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 PRKAR1BP31321 381 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 ZEB1P37275 1124 aaPredicted RBP8.54□□□□□ -1.04
VMP1-208ENST00000588617 STAT1P42224 750 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 CCT4P50991 539 aaKnown RBP8.54□□□□□ -1.04
VMP1-208ENST00000588617 PGDP52209 483 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 CHN2P52757 468 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 SF3A3Q12874 501 aaKnown RBP eCLIP8.54□□□□□ -1.04
VMP1-208ENST00000588617 P3H1Q32P28 736 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 SPATA31D4Q6ZUB0 917 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 FAM168AQ92567 244 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 ZDHHC12Q96GR4 267 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 LRIG1Q96JA1 1093 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 ZBTB45Q96K62 511 aaPredicted RBP8.54□□□□□ -1.04
VMP1-208ENST00000588617 SIGLEC10Q96LC7 697 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 ZCWPW1Q9H0M4 648 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 PDCL3Q9H2J4 239 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 PRDM13Q9H4Q3 707 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 VPS51Q9UID3 782 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 NFU1Q9UMS0 254 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 IRAK3Q9Y616 596 aa8.54□□□□□ -1.04
VMP1-208ENST00000588617 CCDC195A0A1B0GUA6 201 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 FAM90A20PA6NIJ5 464 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 SLC3A2P08195 630 aaKnown RBP8.53□□□□□ -1.04
VMP1-208ENST00000588617 ALOX12P18054 663 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 MGAT1P26572 445 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 TERF1P54274 439 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 ALDH1L2Q3SY69 923 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 SPECC1Q5M775 1068 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 DGAT2L7PQ6IED9 249 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 ANO7Q6IWH7 933 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 CBLL1Q75N03 491 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 TRABD2AQ86V40 505 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 MBD3L2Q8NHZ7 208 aaPredicted RBP8.53□□□□□ -1.04
VMP1-208ENST00000588617 POC1BQ8TC44 478 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 TMEM171Q8WVE6 324 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 LCORQ96JN0 433 aaPredicted RBP8.53□□□□□ -1.04
VMP1-208ENST00000588617 MECRQ9BV79 373 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 PTDSS2Q9BVG9 487 aa8.53□□□□□ -1.04
VMP1-208ENST00000588617 REXO4Q9GZR2 422 aaKnown RBP8.53□□□□□ -1.04
VMP1-208ENST00000588617 VSX1Q9NZR4 365 aaPredicted RBP8.53□□□□□ -1.04
VMP1-208ENST00000588617 NDRG4Q9ULP0 352 aaKnown RBP8.53□□□□□ -1.04
VMP1-208ENST00000588617 A0A1W2PRQ8 180 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 SYNDIG1LA6NDD5 238 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 B4DLN1 442 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 MATN2O00339 956 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 LARGE1O95461 756 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 ITGALP20701 1170 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 GCSHP23434 173 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 PSMC2P35998 433 aaKnown RBP8.52□□□□□ -1.05
VMP1-208ENST00000588617 PAFAH1B1P43034 410 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 CDK7P50613 346 aa8.52□□□□□ -1.05
VMP1-208ENST00000588617 GP2P55259 537 aaKnown RBP8.52□□□□□ -1.05
VMP1-208ENST00000588617 RAC3P60763 192 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms