RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ADH5P11766 374 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 HNRNPLP14866 589 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG3-209ENST00000586435 BCKDHBP21953 392 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 P2RY2P41231 377 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 GRIA2P42262 883 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 AP3M2P53677 418 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 MYL6P60660 151 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 CLDN10P78369 228 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 EOGTQ5NDL2 527 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 DAB2IPQ5VWQ8 1189 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 TMEM92Q6UXU6 159 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 CYP2U1Q7Z449 544 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 FAM35AQ86V20 835 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 C12orf40Q86WS4 652 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 NELFCDQ8IXH7 590 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 PHTF2Q8N3S3 785 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 CCDC33Q8N5R6 958 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 WHAMMQ8TF30 809 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 ZFRQ96KR1 1074 aaKnown RBP12.61□□□□□ -0.39
LIG3-209ENST00000586435 POLMQ9NP87 494 aaPredicted RBP12.61□□□□□ -0.39
LIG3-209ENST00000586435 TMEM9BQ9NQ34 198 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 COMMD8Q9NX08 183 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 SMPD4Q9NXE4 827 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 EVLQ9UI08 416 aaPredicted RBP12.61□□□□□ -0.39
LIG3-209ENST00000586435 CEP295Q9C0D2 2601 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 LAMA1P25391 3075 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 PCNX2A6NKB5 2137 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 ANTXRLA6NF34 631 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 C4orf47A7E2U8 309 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 SGK1O00141 431 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 CLDN5O00501 218 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 TNFRSF10BO14763 440 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 HOXC11O43248 304 aaPredicted RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 COCHO43405 550 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 ZDHHC11BP0C7U3 371 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 CSRP1P21291 193 aaKnown RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 DPP6P42658 865 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 TNFRSF4P43489 277 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 SLC6A11P48066 632 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 NOVA1P51513 510 aaKnown RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 GAD2Q05329 585 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 MESP2Q0VG99 397 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 KNOP1Q1ED39 458 aaKnown RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 ZNF699Q32M78 642 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 PREPLQ4J6C6 727 aaPredicted RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 SPDYCQ5MJ68 293 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 HECTD3Q5T447 861 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 PSAPL1Q6NUJ1 521 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 ETFBKMTQ8IXQ9 262 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 ALLCQ8N6M5 410 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 TXNDC5Q8NBS9 432 aaKnown RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 GOLGA5Q8TBA6 731 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 KCNV2Q8TDN2 545 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 TMEM174Q8WUU8 243 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 FBXO32Q969P5 355 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 SMARCD1Q96GM5 515 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 TNIP3Q96KP6 325 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 SPACA7Q96KW9 195 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 DMAP1Q9NPF5 467 aaPredicted RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 ARHGEF4Q9NR80 690 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 TFIP11Q9UBB9 837 aaKnown RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 NXF1Q9UBU9 619 aaKnown RBP12.6□□□□□ -0.39
LIG3-209ENST00000586435 INVSQ9Y283 1065 aa12.6□□□□□ -0.39
LIG3-209ENST00000586435 CDX4O14627 284 aaPredicted RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 POLR2DO15514 142 aaKnown RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 EXOC3O60645 756 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 KLF8O95600 359 aaPredicted RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 PDIA4P13667 645 aaKnown RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 TIE1P35590 1138 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 SLC5A3P53794 718 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 IFRD2Q12894 506 aaPredicted RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 BYSLQ13895 437 aaKnown RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 ZNF667Q5HYK9 610 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 LY6G5CQ5SRR4 150 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 PEAR1Q5VY43 1037 aaPredicted RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 PAQR9Q6ZVX9 377 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 TRMT11Q7Z4G4 463 aaKnown RBP12.59□□□□□ -0.39
LIG3-209ENST00000586435 SFTPA1Q8IWL2 248 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 PLEKHO2Q8TD55 490 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 PARD3BQ8TEW8 1205 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 KCNK16Q96T55 309 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 SMYD3Q9H7B4 428 aa12.59□□□□□ -0.39
LIG3-209ENST00000586435 LRRIQ3A6PVS8 624 aaPredicted RBP12.58□□□□□ -0.4
LIG3-209ENST00000586435 PATE3B3GLJ2 98 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 SCAMP3O14828 347 aaKnown RBP12.58□□□□□ -0.4
LIG3-209ENST00000586435 ADAM23O75077 832 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 PHACTR2O75167 634 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 C4BPAP04003 597 aaKnown RBP12.58□□□□□ -0.4
LIG3-209ENST00000586435 CEACAM1P13688 526 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 HOXD12P35452 270 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 DHPSP49366 369 aaPredicted RBP12.58□□□□□ -0.4
LIG3-209ENST00000586435 CASP4P49662 377 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 KDSRQ06136 332 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 LMAN2Q12907 356 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 BIRC3Q13489 604 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 NCOA4Q13772 614 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 MAP7D1Q3KQU3 841 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 LPCAT2Q7L5N7 544 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 SLC9A9Q8IVB4 645 aa12.58□□□□□ -0.4
LIG3-209ENST00000586435 FUKQ8N0W3 1084 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms