RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 STK38Q15208 465 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 SURF1Q15526 300 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 MAPRE1Q15691 268 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 SNRNP35Q16560 246 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 UAP1L1Q3KQV9 507 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 LY6G5CQ5SRR4 150 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 SH3PXD2AQ5TCZ1 1133 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 FOXD4L5Q5VV16 416 aaPredicted RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 TDRD10Q5VZ19 366 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 SHC4Q6S5L8 630 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 PHTF2Q8N3S3 785 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 SCFD1Q8WVM8 642 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 FOXD4L4Q8WXT5 416 aaPredicted RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 ZFRQ96KR1 1074 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 CNOT6LQ96LI5 555 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 PNKPQ96T60 521 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 CGRRF1Q99675 332 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 SDCBP2Q9H190 292 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 XYLT2Q9H1B5 865 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 SMYD3Q9H7B4 428 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 CACNA1EQ15878 2313 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 KIAA0391O15091 583 aaKnown RBP12.36□□□□□ -0.43
LIG3-207ENST00000586119 COCHO43405 550 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 YWHAQP27348 245 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 ANP32AP39687 249 aaKnown RBP12.36□□□□□ -0.43
LIG3-207ENST00000586119 P2RY2P41231 377 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 WASP42768 502 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 MRPS21P82921 87 aaKnown RBP12.36□□□□□ -0.43
LIG3-207ENST00000586119 ORC1Q13415 861 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 FOXD4L6Q3SYB3 417 aaPredicted RBP12.36□□□□□ -0.43
LIG3-207ENST00000586119 FOXD4L3Q6VB84 417 aaPredicted RBP12.36□□□□□ -0.43
LIG3-207ENST00000586119 CYP2U1Q7Z449 544 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 NUP93Q8N1F7 819 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 B3GALNT2Q8NCR0 500 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 TNMDQ9H2S6 317 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 CCSER2Q9H7U1 834 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 SLC39A2Q9NP94 309 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 ARHGEF4Q9NR80 690 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 WASF3Q9UPY6 502 aa12.36□□□□□ -0.43
LIG3-207ENST00000586119 ATXN2Q99700 1313 aaKnown RBP12.36□□□□□ -0.43
LIG3-207ENST00000586119 A0A0A0MRY4 1105 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 TNFRSF10BO14763 440 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 SPTLC2O15270 562 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 EIF3DO15371 548 aaKnown RBP eCLIP12.35□□□□□ -0.43
LIG3-207ENST00000586119 STX6O43752 255 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 BEST1O76090 585 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 APODP05090 189 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 HSP90AA1P07900 732 aaKnown RBP12.35□□□□□ -0.43
LIG3-207ENST00000586119 ADH5P11766 374 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 PFKLP17858 780 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 TNNC1P63316 161 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 EHHADHQ08426 723 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 ZNF252P-AS1Q0IIN9 211 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 MAP7D1Q3KQU3 841 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 FAM26FQ5R3K3 315 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 SCARA5Q6ZMJ2 495 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 TMEM25Q86YD3 366 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 MIB1Q86YT6 1006 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 BBS7Q8IWZ6 715 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 GRAMD1CQ8IYS0 662 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 XXYLT1Q8NBI6 393 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 DEFB124Q8NES8 71 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 ZMIZ2Q8NF64 920 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 HMGB4Q8WW32 186 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 FBXO32Q969P5 355 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 CEP295NLQ96MC4 621 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 C7orf25Q9BPX7 421 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 KIAA1586Q9HCI6 787 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 TMEM9BQ9NQ34 198 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 MORC2Q9Y6X9 1032 aaPredicted RBP12.35□□□□□ -0.43
LIG3-207ENST00000586119 CACNA1GO43497 2377 aa12.35□□□□□ -0.43
LIG3-207ENST00000586119 TCRBV21S2A2A0A5A6 115 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 MAP3K13O43283 966 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 VNN1O95497 513 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 TBX18O95935 607 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 PROS1P07225 676 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 IRF1P10914 325 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 AFMP43652 599 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 MAPK8P45983 427 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 PPP3CCP48454 512 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 PDE6CP51160 858 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 TRPC3Q13507 836 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 CUL4BQ13620 913 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 TRIM61Q5EBN2 209 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 DAB2IPQ5VWQ8 1189 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 KIAA1211LQ6NV74 962 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 STXBP4Q6ZWJ1 553 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 FAM35AQ86V20 835 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 ETFBKMTQ8IXQ9 262 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 PGBD3Q8N328 593 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 SLITRK1Q96PX8 696 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 ACOX2Q99424 681 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 SMOQ99835 787 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 MED10Q9BTT4 135 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 TMEM121BQ9BXQ6 578 aaPredicted RBP12.34□□□□□ -0.43
LIG3-207ENST00000586119 ELOVL4Q9GZR5 314 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.34□□□□□ -0.431e-12■■■■■ 236
LIG3-207ENST00000586119 GMIPQ9P107 970 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 ZMIZ1Q9ULJ6 1067 aa12.34□□□□□ -0.43
LIG3-207ENST00000586119 PLXND1Q9Y4D7 1925 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms