RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TCF25Q9BQ70 676 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 POPDC2Q9HBU9 364 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 TMEM30AQ9NV96 361 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 PCDH10Q9P2E7 1040 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 RNF14Q9UBS8 474 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 DPP7Q9UHL4 492 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 SCML2Q9UQR0 700 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.03■□□□□ 0.16
SS18-215ENST00000580642 CCDC66A2RUB6 948 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 GOLGA8SH3BPF8 625 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 C2CD2LO14523 706 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 TEX28O15482 410 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 GPD1P21695 349 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 CTNNA2P26232 953 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 PCK1P35558 622 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 SLC5A3P53794 718 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 RPL7AP62424 266 aaKnown RBP16.02■□□□□ 0.16
SS18-215ENST00000580642 SMAD3P84022 425 aaKnown RBP16.02■□□□□ 0.16
SS18-215ENST00000580642 DUSP4Q13115 394 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 RPS6KA1Q15418 735 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 CLUL1Q15846 466 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 MGAT5BQ3V5L5 792 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 DENND5BQ6ZUT9 1274 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 MON1AQ86VX9 555 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 SCN4BQ8IWT1 228 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 HDAC7Q8WUI4 952 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 POF1BQ8WVV4 589 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 OVCA2Q8WZ82 227 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 HES6Q96HZ4 224 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 PGLYRP2Q96PD5 576 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 SLC2A13Q96QE2 648 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 C17orf80Q9BSJ5 609 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 DDX23Q9BUQ8 820 aaKnown RBP16.02■□□□□ 0.16
SS18-215ENST00000580642 TTLL2Q9BWV7 592 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 ULBP1Q9BZM6 244 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 ENTPD7Q9NQZ7 604 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 METTL5Q9NRN9 209 aaKnown RBP16.02■□□□□ 0.16
SS18-215ENST00000580642 TJP2Q9UDY2 1190 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 STAP1Q9ULZ2 295 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 ASB3Q9Y575 518 aa16.02■□□□□ 0.16
SS18-215ENST00000580642 A0A1W2PPC1 479 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 ADAM12O43184 909 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 DAB1O75553 588 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 RNF8O76064 485 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 VNN2O95498 520 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 CNPP09543 421 aaKnown RBP16.01■□□□□ 0.15
SS18-215ENST00000580642 PDGFRAP16234 1089 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 COMTP21964 271 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 SDC4P31431 198 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 NOS2P35228 1153 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 MATKP42679 507 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 PPP3CCP48454 512 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 LILRA6Q6PI73 481 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 ELMSAN1Q6PJG2 1045 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 CCDC149Q6ZUS6 474 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 POLNQ7Z5Q5 900 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 ZNF276Q8N554 614 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 UBL4BQ8N7F7 174 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 CD101Q93033 1021 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 NT5C3BQ969T7 300 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 KLHL5Q96PQ7 755 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 TLR10Q9BXR5 811 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 PBX4Q9BYU1 374 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 RHOBTB2Q9BYZ6 727 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.01■□□□□ 0.15
SS18-215ENST00000580642 SNX12Q9UMY4 172 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 PCDHA3Q9Y5H8 950 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 SAR1BQ9Y6B6 198 aa16.01■□□□□ 0.15
SS18-215ENST00000580642 NLRC5Q86WI3 1866 aa16■□□□□ 0.15
SS18-215ENST00000580642 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16■□□□□ 0.15
SS18-215ENST00000580642 C2orf71A6NGG8 1288 aa16■□□□□ 0.15
SS18-215ENST00000580642 GRXCR1A8MXD5 290 aa16■□□□□ 0.15
SS18-215ENST00000580642 PSTPIP1O43586 416 aa16■□□□□ 0.15
SS18-215ENST00000580642 SPOPO43791 374 aa16■□□□□ 0.15
SS18-215ENST00000580642 F9P00740 461 aa16■□□□□ 0.15
SS18-215ENST00000580642 CSH1P0DML2 217 aa16■□□□□ 0.15
SS18-215ENST00000580642 CSH2P0DML3 217 aa16■□□□□ 0.15
SS18-215ENST00000580642 RPL17P18621 184 aaKnown RBP16■□□□□ 0.15
SS18-215ENST00000580642 DNAJB2P25686 324 aa16■□□□□ 0.15
SS18-215ENST00000580642 PSMA2P25787 234 aa16■□□□□ 0.15
SS18-215ENST00000580642 YWHAQP27348 245 aa16■□□□□ 0.15
SS18-215ENST00000580642 CTNNA1P35221 906 aaKnown RBP16■□□□□ 0.15
SS18-215ENST00000580642 ALDH1A3P47895 512 aa16■□□□□ 0.15
SS18-215ENST00000580642 VEPH1Q14D04 833 aa16■□□□□ 0.15
SS18-215ENST00000580642 HADHQ16836 314 aaKnown RBP16■□□□□ 0.15
SS18-215ENST00000580642 SLC25A52Q3SY17 297 aa16■□□□□ 0.15
SS18-215ENST00000580642 FAM109BQ6ICB4 259 aaPredicted RBP16■□□□□ 0.15
SS18-215ENST00000580642 LLGL2Q6P1M3 1020 aa16■□□□□ 0.15
SS18-215ENST00000580642 STRADAQ7RTN6 431 aa16■□□□□ 0.15
SS18-215ENST00000580642 PHLDB2Q86SQ0 1253 aa16■□□□□ 0.15
SS18-215ENST00000580642 RHOT1Q8IXI2 618 aa16■□□□□ 0.15
SS18-215ENST00000580642 PDZD8Q8NEN9 1154 aa16■□□□□ 0.15
SS18-215ENST00000580642 JOSD2Q8TAC2 188 aa16■□□□□ 0.15
SS18-215ENST00000580642 RXFP2Q8WXD0 754 aa16■□□□□ 0.15
SS18-215ENST00000580642 CENPIQ92674 756 aaPredicted RBP16■□□□□ 0.15
SS18-215ENST00000580642 PGAP3Q96FM1 320 aaPredicted RBP16■□□□□ 0.15
SS18-215ENST00000580642 TRMT2BQ96GJ1 504 aaKnown RBP16■□□□□ 0.15
SS18-215ENST00000580642 PBKQ96KB5 322 aa16■□□□□ 0.15
SS18-215ENST00000580642 MYRFLQ96LU7 910 aa16■□□□□ 0.15
SS18-215ENST00000580642 SEPT5Q99719 369 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms