RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZCWPW1Q9H0M4 648 aa7.61□□□□□ -1.19
SS18-214ENST00000580003 DKK4Q9UBT3 224 aa7.61□□□□□ -1.19
SS18-214ENST00000580003 KAT6AQ92794 2004 aa7.61□□□□□ -1.19
SS18-214ENST00000580003 ANO9A1A5B4 782 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 AP4M1O00189 453 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 GATMP50440 423 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 TIRAPP58753 221 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 E2F1Q01094 437 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 CYP1B1Q16678 543 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 L1TD1Q5T7N2 865 aaKnown RBP7.6□□□□□ -1.19
SS18-214ENST00000580003 LIX1LQ8IVB5 337 aa7.6□□□□□ -1.19
SS18-214ENST00000580003 MASP2O00187 686 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 CES2O00748 559 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 ZNF213O14771 459 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 GKP32189 559 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 STT3AP46977 705 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 PRIM2P49643 509 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 CASP5P51878 434 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 TBX4P57082 545 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 CYP4F2P78329 520 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 TIAL1Q01085 375 aaKnown RBP eCLIP7.59□□□□□ -1.19
SS18-214ENST00000580003 KCNAB1Q14722 419 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 ZNF788Q6ZQV5 615 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 PTF1AQ7RTS3 328 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 PRR25Q96S07 402 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 HEYLQ9NQ87 328 aaPredicted RBP7.59□□□□□ -1.19
SS18-214ENST00000580003 AMFRQ9UKV5 643 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 CAPN11Q9UMQ6 739 aa7.59□□□□□ -1.19
SS18-214ENST00000580003 M0R3H8 397 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 SNX2O60749 519 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 PMPCBO75439 489 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 A1BGP04217 495 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 MYL3P08590 195 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 MYCLP12524 364 aaPredicted RBP7.58□□□□□ -1.2
SS18-214ENST00000580003 KLHDC7AQ5VTJ3 777 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 RRAGBQ5VZM2 374 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 ZNF575Q86XF7 245 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 HASPINQ8TF76 798 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 DAZAP1Q96EP5 407 aaKnown RBP7.58□□□□□ -1.2
SS18-214ENST00000580003 ZC3H10Q96K80 434 aaKnown RBP7.58□□□□□ -1.2
SS18-214ENST00000580003 LENG8Q96PV6 779 aaPredicted RBP7.58□□□□□ -1.2
SS18-214ENST00000580003 HIST1H2AAQ96QV6 131 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 NAA15Q9BXJ9 866 aaKnown RBP7.58□□□□□ -1.2
SS18-214ENST00000580003 TRIM36Q9NQ86 728 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 DNAJB11Q9UBS4 358 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 HPSEQ9Y251 543 aa7.58□□□□□ -1.2
SS18-214ENST00000580003 FER1L4A9Z1Z3 1794 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 PDE8BO95263 885 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 CD19P15391 556 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 HOXA4Q00056 320 aaPredicted RBP7.57□□□□□ -1.2
SS18-214ENST00000580003 PICALMQ13492 652 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 DENND2CQ68D51 928 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 CCSAPQ6IQ19 270 aaPredicted RBP7.57□□□□□ -1.2
SS18-214ENST00000580003 TRIM72Q6ZMU5 477 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 BEND5Q7L4P6 421 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 ARNT2Q9HBZ2 717 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 STARD7Q9NQZ5 370 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 TFCP2L1Q9NZI6 479 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 SERGEFQ9UGK8 458 aa7.57□□□□□ -1.2
SS18-214ENST00000580003 MANSC4A6NHS7 340 aaPredicted RBP7.56□□□□□ -1.2
SS18-214ENST00000580003 SMIM22K7EJ46 135 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 EXOC5O00471 708 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 APOL1O14791 398 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 AREL1O15033 823 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 EXOC3O60645 756 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 TSHRP16473 764 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 FBLP22087 321 aaKnown RBP7.56□□□□□ -1.2
SS18-214ENST00000580003 PROK1P58294 105 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 TMEM119Q4V9L6 283 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 KRT28Q7Z3Y7 464 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 TERB1Q8NA31 727 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 CCDC150Q8NCX0 1101 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 NTN5Q8WTR8 489 aaPredicted RBP7.56□□□□□ -1.2
SS18-214ENST00000580003 REPS1Q96D71 796 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 LRRC46Q96FV0 321 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 THAP7Q9BT49 309 aaPredicted RBP7.56□□□□□ -1.2
SS18-214ENST00000580003 COLEC11Q9BWP8 271 aa7.56□□□□□ -1.2
SS18-214ENST00000580003 AOX1Q06278 1338 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 CLCA1A8K7I4 914 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 PRKCGP05129 697 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 CREB1P16220 341 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 FGFR2P21802 821 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 C21orf58P58505 322 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 MRPS21P82921 87 aaKnown RBP7.55□□□□□ -1.2
SS18-214ENST00000580003 LONRF1Q17RB8 773 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 MANEALQ5VSG8 457 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 PTCHD4Q6ZW05 846 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 DPP9Q86TI2 863 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 SFTPA1Q8IWL2 248 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 VGLL2Q8N8G2 317 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 RNF152Q8N8N0 203 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 NGDNQ8NEJ9 315 aaKnown RBP7.55□□□□□ -1.2
SS18-214ENST00000580003 CYP2W1Q8TAV3 490 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 MACROD1Q9BQ69 325 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 MAGEB5Q9BZ81 275 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 CIPCQ9C0C6 399 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 SNX15Q9NRS6 342 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 MYO1AQ9UBC5 1043 aa7.55□□□□□ -1.2
SS18-214ENST00000580003 NKX1-2Q9UD57 310 aaPredicted RBP7.55□□□□□ -1.2
SS18-214ENST00000580003 STEAP1Q9UHE8 339 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms