RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 RNF38Q9H0F5 515 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 SMG9Q9H0W8 520 aaKnown RBP14.33□□□□□ -0.12
CIITA-210ENST00000575513 HEBP1Q9NRV9 189 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 HESX1Q9UBX0 185 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 TSPAN16Q9UKR8 245 aa14.33□□□□□ -0.12
CIITA-210ENST00000575513 RNF225M0QZC1 329 aaPredicted RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 XPO1O14980 1071 aaKnown RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 NCAM2O15394 837 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 ABL1P00519 1130 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 SETSIPP0DME0 302 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 CD19P15391 556 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 SLC9A1P19634 815 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 RFX1P22670 979 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 MAGEA9P43362 315 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 VCPP55072 806 aaKnown RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 BST2Q10589 180 aaKnown RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 IFRD2Q12894 506 aaPredicted RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 USP4Q13107 963 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 MEA1Q16626 185 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 PKDCCQ504Y2 493 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 IER5LQ5T953 404 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 CDKAL1Q5VV42 579 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 KLHDC10Q6PID8 442 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 C11orf57Q6ZUT1 292 aaPredicted RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 PIGZQ86VD9 579 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 TTC30AQ86WT1 665 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 RALGPS2Q86X27 583 aaPredicted RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 TMEM105Q8N8V8 129 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 RBBP8NLQ8NC74 664 aaPredicted RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 PJA1Q8NG27 643 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 SH3RF2Q8TEC5 729 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 OSCP1Q8WVF1 389 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 KCTD13Q8WZ19 329 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 KAT5Q92993 513 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 CRACR2AQ9BSW2 395 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 FUCA2Q9BTY2 467 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 NAT10Q9H0A0 1025 aaKnown RBP14.32□□□□□ -0.12
CIITA-210ENST00000575513 IRF2BPLQ9H1B7 796 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 CYLDQ9NQC7 956 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 GKN1Q9NS71 199 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 CLIC5Q9NZA1 410 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 PIAS3Q9Y6X2 628 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 GREB1Q4ZG55 1949 aa14.32□□□□□ -0.12
CIITA-210ENST00000575513 ZNF318Q5VUA4 2279 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 LRRC10BA6NIK2 292 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 SHISA7A6NL88 538 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 PI15O43692 258 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 PLA2G4AP47712 749 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 AMPD2Q01433 879 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 MYL5Q02045 173 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 MTF1Q14872 753 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 GOLGA7BQ2TAP0 167 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 ITPRIPL2Q3MIP1 535 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 PM20D1Q6GTS8 502 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 TPRG1Q6ZUI0 275 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 GPRIN1Q7Z2K8 1008 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 TADA2BQ86TJ2 420 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 SCML4Q8N228 414 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 ARHGAP18Q8N392 663 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 TFAP2BQ92481 460 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 CLDN23Q96B33 292 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 CDK5RAP1Q96SZ6 601 aaKnown RBP14.31□□□□□ -0.12
CIITA-210ENST00000575513 BPIFA3Q9BQP9 254 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 LTB4R2Q9NPC1 389 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 GMIPQ9P107 970 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 NUP210Q8TEM1 1887 aaPredicted RBP14.31□□□□□ -0.12
CIITA-210ENST00000575513 DENND4CQ5VZ89 1909 aa14.31□□□□□ -0.12
CIITA-210ENST00000575513 FAM170BA6NMN3 283 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 LEFTY2O00292 366 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 SLC9A3R1O14745 358 aaPredicted RBP14.3□□□□□ -0.12
CIITA-210ENST00000575513 COCHO43405 550 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 GALR2O43603 387 aaPredicted RBP14.3□□□□□ -0.12
CIITA-210ENST00000575513 TPM2P07951 284 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 RPS9P46781 194 aaKnown RBP14.3□□□□□ -0.12
CIITA-210ENST00000575513 KPNA1P52294 538 aaPredicted RBP14.3□□□□□ -0.12
CIITA-210ENST00000575513 ZXDBP98169 803 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 PDE4CQ08493 712 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 RUNX3Q13761 415 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 CCDC105Q8IYK2 499 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 ZNF687Q8N1G0 1237 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 SLC35F5Q8WV83 523 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 FAM3CQ92520 227 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 SHC3Q92529 594 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 ZFYVE19Q96K21 471 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 SIX2Q9NPC8 291 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 FANCLQ9NW38 375 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 DUS2Q9NX74 493 aaKnown RBP14.3□□□□□ -0.12
CIITA-210ENST00000575513 GTSE1Q9NYZ3 720 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 DLGAP2Q9P1A6 1054 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.3□□□□□ -0.12
CIITA-210ENST00000575513 CPQQ9Y646 472 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 F5P12259 2224 aa14.3□□□□□ -0.12
CIITA-210ENST00000575513 E2F8A0AVK6 867 aa14.29□□□□□ -0.12
CIITA-210ENST00000575513 SYCE3A1L190 88 aa14.29□□□□□ -0.12
CIITA-210ENST00000575513 CYP26A1O43174 497 aa14.29□□□□□ -0.12
CIITA-210ENST00000575513 MED7O43513 233 aa14.29□□□□□ -0.12
CIITA-210ENST00000575513 TLR5O60602 858 aa14.29□□□□□ -0.12
CIITA-210ENST00000575513 ZBED1O96006 694 aa14.29□□□□□ -0.12
CIITA-210ENST00000575513 MBL2P11226 248 aaPredicted RBP14.29□□□□□ -0.12
CIITA-210ENST00000575513 RALAP11233 206 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms