RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 TRAPPC12Q8WVT3 735 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 PTCD3Q96EY7 689 aaKnown RBP17.82■□□□□ 0.44
VPS53-215ENST00000573028 ACAP3Q96P50 834 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 SMYD3Q9H7B4 428 aa17.82■□□□□ 0.44
VPS53-215ENST00000573028 CXorf49A8MYA2 514 aaPredicted RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 E7ESA3 106 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 I3L4J1 428 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 DLDP09622 509 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 CXCL8P10145 99 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 XYLT1Q86Y38 959 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 MTMR14Q8NCE2 650 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 SLC44A1Q8WWI5 657 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 SCG3Q8WXD2 468 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 ANKRD36BP1Q96IX9 119 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 SYT15Q9BQS2 421 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 GJA3Q9Y6H8 435 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 TBX10O75333 385 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 UBA1P22314 1058 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 VHLP40337 213 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 PRKD1Q15139 912 aaPredicted RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 REPS2Q8NFH8 660 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 FBXO27Q8NI29 283 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 RILPQ96NA2 401 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 PEBP4Q96S96 227 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 PCYT2Q99447 389 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 ZC3H7BQ9UGR2 993 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 E7ENQ6 273 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 TCF7P36402 384 aaPredicted RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 KRT81Q14533 505 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 EEF1DP3Q658K8 133 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 OR6B2Q6IFH4 312 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 ZCCHC23Q6ZST2 131 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 TEX9Q8N6V9 391 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 NRG4Q8WWG1 115 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 JDP2Q8WYK2 163 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 CLPTM1LQ96KA5 538 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 HEXIM2Q96MH2 286 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 ACO2Q99798 780 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 XYLT2Q9H1B5 865 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 NGRNQ9NPE2 291 aaKnown RBP17.81■□□□□ 0.44
VPS53-215ENST00000573028 HACL1Q9UJ83 578 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 PCDHGC3Q9UN70 934 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 WASF2Q9Y6W5 498 aa17.81■□□□□ 0.44
VPS53-215ENST00000573028 WDR81Q562E7 1941 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 EME2A4GXA9 379 aaPredicted RBP17.8■□□□□ 0.44
VPS53-215ENST00000573028 TOP3BO95985 862 aaKnown RBP17.8■□□□□ 0.44
VPS53-215ENST00000573028 LMNAP02545 664 aaKnown RBP17.8■□□□□ 0.44
VPS53-215ENST00000573028 RFC5P40937 340 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 ETV4P43268 484 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 LAMTOR4Q0VGL1 99 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 NBPF20Q3BBV1 942 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 ZBTB8OSQ8IWT0 167 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 SKA1Q96BD8 255 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 TMEM134Q9H6X4 195 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 TLE6Q9H808 572 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 AFG3L2Q9Y4W6 797 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 A6NHS1 94 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 MED7O43513 233 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 SMIM24O75264 130 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 HOXC6P09630 235 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 AMPD1P23109 780 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 RGS7P49802 495 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 AP3M2P53677 418 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 BST1Q10588 318 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 CHI3L2Q15782 390 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 THEMIS2Q5TEJ8 643 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 MROH9Q5TGP6 573 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 CDCA2Q69YH5 1023 aaPredicted RBP17.8■□□□□ 0.44
VPS53-215ENST00000573028 ZPBP2Q6X784 338 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 PCMTD2Q9NV79 361 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 PCNTO95613 3336 aa17.8■□□□□ 0.44
VPS53-215ENST00000573028 PSMG1O95456 288 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 TRUB2O95900 331 aaKnown RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 PDGFRAP16234 1089 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 NEK3P51956 506 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 ALDH18A1P54886 795 aaKnown RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 PPP6R3Q5H9R7 873 aaPredicted RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 ZBED3Q96IU2 234 aaPredicted RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 PIWIL1Q96J94 861 aaKnown RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 SDCBP2Q9H190 292 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 FAM189A1O60320 539 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 HNRNPCL1O60812 293 aaKnown RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 PTPRAP18433 802 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 LY6KQ17RY6 165 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 SLC26A11Q86WA9 606 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 SPDYE1Q8NFV5 336 aaPredicted RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 CCDC110Q8TBZ0 833 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 ZNF333Q96JL9 665 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 RSAD1Q9HA92 442 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 FETUBQ9UGM5 382 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 CPSF3Q9UKF6 684 aaKnown RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 TEX264Q9Y6I9 313 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 MAP3K13O43283 966 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 KRT37O76014 449 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 MICAL2O94851 1124 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 BAG2O95816 211 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 ITGB3P05106 788 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 RBL1P28749 1068 aa17.79■□□□□ 0.44
VPS53-215ENST00000573028 CDH5P33151 784 aaPredicted RBP17.79■□□□□ 0.44
VPS53-215ENST00000573028 LRRC74BQ6ZQY2 392 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms