RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ADAM23O75077 832 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 BEST1O76090 585 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 NFATC1O95644 943 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 APBB3O95704 486 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 ZDHHC11BP0C7U3 371 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 CCDC192P0DO97 292 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 BCKDHBP21953 392 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 MPLP40238 635 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 KIR2DL1P43626 348 aaPredicted RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 SNRPFP62306 86 aaKnown RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 DLG4P78352 724 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 AMPD2Q01433 879 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 STK4Q13043 487 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 DHCR24Q15392 516 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 MAPRE1Q15691 268 aaKnown RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 C2orf27AQ580R0 203 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 STPG1Q5TH74 334 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 EMC10Q5UCC4 262 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 FOXD4L5Q5VV16 416 aaPredicted RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 SNX30Q5VWJ9 437 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 FUKQ8N0W3 1084 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 FRMD1Q8N878 549 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 FSIP1Q8NA03 581 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 IQUBQ8NA54 791 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 TTC16Q8NEE8 873 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 MDGA1Q8NFP4 955 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 OR6B3Q8NGW1 331 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 SCAMP5Q8TAC9 235 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 OLIG1Q8TAK6 271 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 PARD3BQ8TEW8 1205 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 TMEM174Q8WUU8 243 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 FOXD4L4Q8WXT5 416 aaPredicted RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 SNX21Q969T3 373 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 P2RY11Q96G91 374 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 CHAMP1Q96JM3 812 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 MMS19Q96T76 1030 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 LSM14BQ9BX40 385 aaKnown RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 TPSD1Q9BZJ3 242 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 KCTD10Q9H3F6 313 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 ZDHHC4Q9NPG8 344 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 SMPD4Q9NXE4 827 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 HMGXB4Q9UGU5 601 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 MMP17Q9ULZ9 603 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 INVSQ9Y283 1065 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 PVALEFA0A1B0GWK0 134 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 LNP1A1A4G5 178 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 GOLGA6L3A6NEY3 463 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 A8MXQ7 604 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 PATE3B3GLJ2 98 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 SGK1O00141 431 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CDX4O14627 284 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 TRIM24O15164 1050 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 COCHO43405 550 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 FOXD2O60548 495 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 F13A1P00488 732 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 ZSCAN22P10073 491 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 ANXA13P27216 316 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 ATICP31939 592 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 AFMP43652 599 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 PPP3CCP48454 512 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 SEC13P55735 322 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 AMPD3Q01432 767 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 NR1H3Q13133 447 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 PSMD2Q13200 908 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CRY1Q16526 586 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 KNOP1Q1ED39 458 aaKnown RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 FOXD4L6Q3SYB3 417 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 AASDHQ4L235 1098 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 PMS2CLQ68D20 193 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 FOXD4L3Q6VB84 417 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 STXBP4Q6ZWJ1 553 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 HS2ST1Q7LGA3 356 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 FAM35AQ86V20 835 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 SLC9A9Q8IVB4 645 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 ETFBKMTQ8IXQ9 262 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 NUP93Q8N1F7 819 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CCDC33Q8N5R6 958 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 IL17RCQ8NAC3 791 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 ACDQ96AP0 544 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CNOT6LQ96LI5 555 aaKnown RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 ZNF396Q96N95 335 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 FNBP1Q96RU3 617 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 SMOQ99835 787 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 DUSP9Q99956 384 aaKnown RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 LRRC27Q9C0I9 530 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 ELOVL4Q9GZR5 314 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 SNX25Q9H3E2 840 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CCSER2Q9H7U1 834 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 MAGEF1Q9HAY2 307 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CD248Q9HCU0 757 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 VPS45Q9NRW7 570 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 CFAP97Q9P2B7 532 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 NXF1Q9UBU9 619 aaKnown RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 CHORDC1Q9UHD1 332 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 SERTAD1Q9UHV2 236 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 MBD1Q9UIS9 605 aaPredicted RBP7.14□□□□□ -1.27
VPS53-213ENST00000572334 WASF3Q9UPY6 502 aa7.14□□□□□ -1.27
VPS53-213ENST00000572334 ZFYVE26Q68DK2 2539 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 FAM208BQ5VWN6 2430 aa7.13□□□□□ -1.27
VPS53-213ENST00000572334 PLXNB3Q9ULL4 1909 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms