RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ELF1P32519 619 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 EIF4A3P38919 411 aaKnown RBP9.79□□□□□ -0.84
VPS35-211ENST00000569950 ALDH1A3P47895 512 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 TKTL1P51854 596 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 DAOAP59103 153 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 ITIH3Q06033 890 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 KLHL30Q0D2K2 578 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 ADIGQ0VDE8 80 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 PLD1Q13393 1074 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 SNX30Q5VWJ9 437 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 NAA35Q5VZE5 725 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 TRNP1Q6NT89 227 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 OLFML1Q6UWY5 402 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CYP26C1Q6V0L0 522 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CCDC186Q7Z3E2 898 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 XYLT1Q86Y38 959 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 PHF13Q86YI8 300 aaPredicted RBP9.79□□□□□ -0.84
VPS35-211ENST00000569950 RIN3Q8TB24 985 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CPA5Q8WXQ8 436 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 HLA-CQ95604 372 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 HSFY1Q96LI6 401 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 SLC22A12Q96S37 553 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CORO1BQ9BR76 489 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 ULBP1Q9BZM6 244 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 NUCKS1Q9H1E3 243 aaKnown RBP9.79□□□□□ -0.84
VPS35-211ENST00000569950 WDR6Q9NNW5 1121 aaKnown RBP9.79□□□□□ -0.84
VPS35-211ENST00000569950 CYLDQ9NQC7 956 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 HESX1Q9UBX0 185 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CD207Q9UJ71 328 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 SCML2Q9UQR0 700 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 ATP8B3O60423 1300 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CLUHO75153 1309 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 SSU72P8A0A1W2PR75 194 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 ZNF840PA6NDX5 716 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 YJEFN3A6XGL0 299 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 E7ENQ6 273 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 OLFM2O95897 454 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 CSH1P0DML2 217 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 CSH2P0DML3 217 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 PTPN2P17706 415 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 EPHB3P54753 998 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 ZXDBP98169 803 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 TAF10Q12962 218 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 SMAD4Q13485 552 aaKnown RBP9.78□□□□□ -0.84
VPS35-211ENST00000569950 MTF1Q14872 753 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 TAF5Q15542 800 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 PPP1R15BQ5SWA1 713 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 OTUD1Q5VV17 481 aaPredicted RBP9.78□□□□□ -0.84
VPS35-211ENST00000569950 RAD9BQ6WBX8 426 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 CNGA4Q8IV77 575 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 NPAS3Q8IXF0 933 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 RSPRY1Q96DX4 576 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 MCRS1Q96EZ8 462 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 PPP1R13BQ96KQ4 1090 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 ZFRQ96KR1 1074 aaKnown RBP9.78□□□□□ -0.84
VPS35-211ENST00000569950 ZSWIM3Q96MP5 696 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 PANX2Q96RD6 677 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 MYADMQ96S97 322 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 ISCUQ9H1K1 167 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 COMMD8Q9NX08 183 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 GMIPQ9P107 970 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 IMPACTQ9P2X3 320 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 ADAMTS1Q9UHI8 967 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 DPP7Q9UHL4 492 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 COG5Q9UP83 839 aa9.78□□□□□ -0.84
VPS35-211ENST00000569950 REXO2Q9Y3B8 237 aaKnown RBP9.78□□□□□ -0.84
VPS35-211ENST00000569950 A0A1W2PQH9 124 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 A0A1W2PRU2 124 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 C2orf78A6NCI8 922 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 XYLBO75191 536 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 RTN3O95197 1032 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 LCA5LO95447 670 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 ZBED1O96006 694 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 OAS1P00973 400 aaKnown RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 USP17L7P0C7H9 530 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 GZMAP12544 262 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 IL9P15248 144 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 FCARP24071 287 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 ANXA13P27216 316 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 YWHAQP27348 245 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 GABRR2P28476 465 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 KCNQ1P51787 676 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 GSCP56915 257 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 PITX1P78337 314 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 CYP4F8P98187 520 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 EIF4EBP2Q13542 120 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 CBX2Q14781 532 aaPredicted RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 TEAD2Q15562 447 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 SMAD2Q15796 467 aaKnown RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 PABPC1LQ4VXU2 614 aaKnown RBP9.77□□□□□ -0.85
VPS35-211ENST00000569950 CYP4A22Q5TCH4 519 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 ACAD10Q6JQN1 1059 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 TRIM72Q6ZMU5 477 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 MMS22LQ6ZRQ5 1243 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 FAM183BPQ6ZVS7 135 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 ITIH5Q86UX2 942 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 SCUBE3Q8IX30 993 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 MCOLN2Q8IZK6 566 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 TMEM35BQ8NCS4 154 aa9.77□□□□□ -0.85
VPS35-211ENST00000569950 ZNF397Q8NF99 534 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms