RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MPP2Q14168 576 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 FSCN1Q16658 493 aaKnown RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 CA9Q16790 459 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 SCYL2Q6P3W7 929 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 CENPUQ71F23 418 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 CPLX4Q7Z7G2 160 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 PCGF5Q86SE9 256 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 CCDC13Q8IYE1 715 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 TAB3Q8N5C8 712 aaPredicted RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 RNF157Q96PX1 679 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 MAK16Q9BXY0 300 aaKnown RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 ADAM33Q9BZ11 813 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 MYADML2A6NDP7 307 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 IFNAR2P48551 515 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 MSS51Q4VC12 460 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 FNBP1LQ5T0N5 605 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 ZC3H18Q86VM9 953 aaKnown RBP21.18■□□□□ 0.98
CLN3-230ENST00000568076 ANKRD52Q8NB46 1076 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 MAML1Q92585 1016 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 ZNF560Q96MR9 790 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 APBA2Q99767 749 aa21.18■□□□□ 0.98
CLN3-230ENST00000568076 WDR83Q9BRX9 315 aaKnown RBP21.18■□□□□ 0.98
CLN3-230ENST00000568076 NDC80O14777 642 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 TAF6P49848 677 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 HDAC4P56524 1084 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 BST2Q10589 180 aaKnown RBP21.17■□□□□ 0.98
CLN3-230ENST00000568076 LRRC14Q15048 493 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 HIF1AQ16665 826 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 BOLA3Q53S33 107 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 CAPN12Q6ZSI9 719 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 MICALCLQ6ZW33 695 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 LRRC34Q8IZ02 419 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 PQLC3Q8N755 202 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 SNRNP25Q9BV90 132 aaKnown RBP21.17■□□□□ 0.98
CLN3-230ENST00000568076 KATNAL1Q9BW62 490 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 PCDH18Q9HCL0 1135 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 EXOC1LA0A1B0GW35 172 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 TMEM63AO94886 807 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 RPL34P49207 117 aaKnown RBP21.17■□□□□ 0.98
CLN3-230ENST00000568076 BCAT1P54687 386 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 GPX6P59796 221 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 KRT81Q14533 505 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 PDK2Q15119 407 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 FAM47CQ5HY64 1035 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 FAM182AQ5T1J6 154 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 C1orf228Q6PIY5 440 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 YTHDF3Q7Z739 585 aaKnown RBP21.17■□□□□ 0.98
CLN3-230ENST00000568076 FAM228AQ86W67 206 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 ZDHHC17Q8IUH5 632 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 ANKMY2Q8IV38 441 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 NME8Q8N427 588 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 PLD5Q8N7P1 536 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 MGARPQ8TDB4 240 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 TEKT4Q8WW24 435 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 P3H4Q92791 437 aa21.17■□□□□ 0.98
CLN3-230ENST00000568076 C11orf84Q9BUA3 381 aaPredicted RBP21.17■□□□□ 0.98
CLN3-230ENST00000568076 CLUHO75153 1309 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 BRAFP15056 766 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 CTGFP29279 349 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 TKTP29401 623 aaKnown RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 PNPLA4P41247 253 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 ROR1Q01973 937 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 IFT88Q13099 833 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 TFDP2Q14188 446 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 OSTM1Q86WC4 334 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 IFNL1Q8IU54 200 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 SRRM1Q8IYB3 904 aaKnown RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 APPL2Q8NEU8 664 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 SLC2A14Q8TDB8 520 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 SNX25Q9H3E2 840 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 VPS37BQ9H9H4 285 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 CENPFP49454 3210 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 DCAF8L1A6NGE4 600 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 PTGESO14684 152 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 XPOTO43592 962 aaKnown RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 LCP1P13796 627 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 IGFBP6P24592 240 aaPredicted RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 MAGEA9P43362 315 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 ATXN1P54253 815 aaKnown RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 TMED2Q15363 201 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 ANKRD20A8PQ5CZ79 823 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 GKAP1Q5VSY0 366 aaPredicted RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 DARS2Q6PI48 645 aaKnown RBP21.16■□□□□ 0.98
CLN3-230ENST00000568076 SLC26A9Q7LBE3 791 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 MAP7D3Q8IWC1 876 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 TRPV1Q8NER1 839 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 PCDH19Q8TAB3 1148 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 TSPAN18Q96SJ8 248 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 KCNK9Q9NPC2 374 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 UBN1Q9NPG3 1134 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 NMRK2Q9NPI5 230 aa21.16■□□□□ 0.98
CLN3-230ENST00000568076 ARL4CP56559 192 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 SNX16P57768 344 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 LILRA4P59901 499 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 SV2CQ496J9 727 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 TWF2Q6IBS0 349 aaKnown RBP21.15■□□□□ 0.98
CLN3-230ENST00000568076 TADA2BQ86TJ2 420 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 TDRPQ86YL5 185 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 ADGRF2Q8IZF7 708 aa21.15■□□□□ 0.98
CLN3-230ENST00000568076 CACNA2D3Q8IZS8 1091 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms