RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZFP69BQ9UJL9 534 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 EFR3BQ9Y2G0 817 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 FARP1Q9Y4F1 1045 aaPredicted RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 KAT6AQ92794 2004 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 LRRD1A4D1F6 860 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 TM9SF1O15321 606 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 SMNDC1O75940 238 aaKnown RBP eCLIP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 TPBGLP0DKB5 382 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 TROVE2P10155 538 aaKnown RBP eCLIP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 IMPDH2P12268 514 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 AKR1A1P14550 325 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 INSRRP14616 1297 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 GLRA2P23416 452 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 ARL4CP56559 192 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 CACNB2Q08289 660 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 NCOA4Q13772 614 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 TAF1BQ53T94 588 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 NAIF1Q69YI7 327 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 ADGRD1Q6QNK2 874 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 PPIL6Q8IXY8 311 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 NIPA2Q8N8Q9 360 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 TMEM35BQ8NCS4 154 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 ALKBH8Q96BT7 664 aaKnown RBP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 MSTO1Q9BUK6 570 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 FRMD8P1Q9BZ68 369 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 IMPG2Q9BZV3 1241 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 ZNF518BQ9C0D4 1074 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 HAPLN2Q9GZV7 340 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 ANKFY1Q9P2R3 1169 aa13.83□□□□□ -0.2
VPS4A-204ENST00000566354 CORO1CQ9ULV4 474 aaPredicted RBP13.83□□□□□ -0.2
VPS4A-204ENST00000566354 K7ERI5 159 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 CBX6O95503 412 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 FGFR1P11362 822 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 ARL2P36404 184 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 RPS6KA3P51812 740 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 KLHL38Q2WGJ6 581 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 POLNQ7Z5Q5 900 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 ANKMY2Q8IV38 441 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 RBM12BQ8IXT5 1001 aaKnown RBP13.82□□□□□ -0.2
VPS4A-204ENST00000566354 KCNV2Q8TDN2 545 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 SPDL1Q96EA4 605 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 DHRS4Q9BTZ2 278 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 TUBB6Q9BUF5 446 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 VPS11Q9H270 941 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 CLUHO75153 1309 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 A0A0B4J269 797 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 MYADML2A6NDP7 307 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 LMNAP02545 664 aaKnown RBP13.82□□□□□ -0.2
VPS4A-204ENST00000566354 GM2AP17900 193 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 EPHB2P29323 1055 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 RAD23BP54727 409 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 OGDHQ02218 1023 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 CMPK2Q5EBM0 449 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 PPP1R15BQ5SWA1 713 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 TXNRD3NBQ6F5E7 133 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 CAPRIN2Q6IMN6 1127 aaKnown RBP13.82□□□□□ -0.2
VPS4A-204ENST00000566354 CLNKQ7Z7G1 428 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 MTDHQ86UE4 582 aaKnown RBP13.82□□□□□ -0.2
VPS4A-204ENST00000566354 UBR7Q8N806 425 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 TTC13Q8NBP0 860 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 HAUS1Q96CS2 278 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 ZBTB45Q96K62 511 aaPredicted RBP13.82□□□□□ -0.2
VPS4A-204ENST00000566354 AP5M1Q9H0R1 490 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 ACSS3Q9H6R3 686 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 NPHS2Q9NP85 383 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 ZMYND8Q9ULU4 1186 aaPredicted RBP13.82□□□□□ -0.2
VPS4A-204ENST00000566354 CNTNAP2Q9UHC6 1331 aa13.82□□□□□ -0.2
VPS4A-204ENST00000566354 IGKV6-21A0A0C4DH24 114 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 GOLGA8SH3BPF8 625 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 GOLGA8MH3BSY2 632 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 SNUPNO95149 360 aaKnown RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 GJB1P08034 283 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 PRKAR2AP13861 404 aaKnown RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 ADRA1DP25100 572 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 CCND3P30281 292 aaPredicted RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 NAMPTP43490 491 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 CTCFP49711 727 aaPredicted RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 AP3M2P53677 418 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 TFDP1Q14186 410 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 MAPK6Q16659 721 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 C3orf62Q6ZUJ4 267 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 OR5B17Q8NGF7 314 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 CFAP61Q8NHU2 1237 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 DEPTORQ8TB45 409 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 MICAL1Q8TDZ2 1067 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 ZNF483Q8TF39 744 aaPredicted RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 E7ESA3 106 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 SMAPO00193 183 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 ADCY3O60266 1144 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 FKTNO75072 461 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 DUSP11O75319 330 aaKnown RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 EIF4BP23588 611 aaKnown RBP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 HOXD10P28358 340 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 SSTR1P30872 391 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 CLCN3P51790 818 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 CTC1Q2NKJ3 1217 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 PLEKHG4Q58EX7 1191 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 ZBTB41Q5SVQ8 909 aa13.81□□□□□ -0.2
VPS4A-204ENST00000566354 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS4A-204ENST00000566354 ZNF276Q8N554 614 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms