RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 FAM149B1Q96BN6 582 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 SEPT5Q99719 369 aaPredicted RBP32.07■■■□□ 2.72
CTCF-203ENST00000566078 TUBB2BQ9BVA1 445 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 CRISPLD1Q9H336 500 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 KCNK3O14649 394 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 HSF2BPO75031 334 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 ZBED1O96006 694 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 CTSAP10619 480 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 HAPLN1P10915 354 aaPredicted RBP32.06■■■□□ 2.72
CTCF-203ENST00000566078 PDGFRAP16234 1089 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 CA8P35219 290 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 ZNF143P52747 638 aaPredicted RBP32.06■■■□□ 2.72
CTCF-203ENST00000566078 SDHAF4Q5VUM1 108 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 KRT35Q92764 455 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 C17orf80Q9BSJ5 609 aa32.06■■■□□ 2.72
CTCF-203ENST00000566078 UBE2OQ9C0C9 1292 aaKnown RBP32.06■■■□□ 2.72
CTCF-203ENST00000566078 TNFRSF10BO14763 440 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 ZNF185O15231 689 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 SOAT2O75908 522 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 CTNNA2P26232 953 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 CTNNA1P35221 906 aaKnown RBP32.05■■■□□ 2.72
CTCF-203ENST00000566078 SSR1P43307 286 aaKnown RBP32.05■■■□□ 2.72
CTCF-203ENST00000566078 MARCKSL1P49006 195 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 IFRD2Q12894 506 aaPredicted RBP32.05■■■□□ 2.72
CTCF-203ENST00000566078 DUSP4Q13115 394 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 SCAMP5Q8TAC9 235 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 COG1Q8WTW3 980 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 UBE2Q2Q8WVN8 375 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 CAPZA3Q96KX2 299 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP32.05■■■□□ 2.72
CTCF-203ENST00000566078 ASNSD1Q9NWL6 643 aa32.05■■■□□ 2.72
CTCF-203ENST00000566078 DPYSL4O14531 572 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 SART1O43290 800 aaKnown RBP32.04■■■□□ 2.72
CTCF-203ENST00000566078 DAB1O75553 588 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 ARHGEF15O94989 841 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 CREMQ03060 361 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 CC2D1AQ6P1N0 951 aaPredicted RBP32.04■■■□□ 2.72
CTCF-203ENST00000566078 ARCQ7LC44 396 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 GPR65Q8IYL9 337 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 STKLD1Q8NE28 680 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 CFAP57Q96MR6 1250 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 CNPY3Q9BT09 278 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 PLVAPQ9BX97 442 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 SSX2IPQ9Y2D8 614 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 COL4A4P53420 1690 aaPredicted RBP32.04■■■□□ 2.72
CTCF-203ENST00000566078 CCDC66A2RUB6 948 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 SDC4P31431 198 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 SPRED2Q7Z698 418 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 ALG13Q9NP73 1137 aaKnown RBP32.04■■■□□ 2.72
CTCF-203ENST00000566078 AFF4Q9UHB7 1163 aaKnown RBP32.04■■■□□ 2.72
CTCF-203ENST00000566078 USP3Q9Y6I4 520 aa32.04■■■□□ 2.72
CTCF-203ENST00000566078 YJEFN3A6XGL0 299 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 E7ENQ6 273 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 RIOK3O14730 519 aaKnown RBP32.03■■■□□ 2.72
CTCF-203ENST00000566078 CA3P07451 260 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 GLI1P08151 1106 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 TAS2R40P59535 323 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 PM20D1Q6GTS8 502 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 HFE2Q6ZVN8 426 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 SCML4Q8N228 414 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 ZNF461Q8TAF7 563 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 IRGQQ8WZA9 623 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 ALG3Q92685 438 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 FNIP2Q9P278 1114 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 MTUS1Q9ULD2 1270 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 LZTS1Q9Y250 596 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 PCDHA3Q9Y5H8 950 aa32.03■■■□□ 2.72
CTCF-203ENST00000566078 LILRB3O75022 631 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 ABLIM3O94929 683 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 YWHAZP63104 245 aaKnown RBP32.02■■■□□ 2.72
CTCF-203ENST00000566078 WHAMMP3Q1A5X7 153 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 C15orf59Q2T9L4 293 aaPredicted RBP32.02■■■□□ 2.72
CTCF-203ENST00000566078 CCDC14Q49A88 953 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 TPGS2Q68CL5 300 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 BHLHA9Q7RTU4 235 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 NUP93Q8N1F7 819 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP32.02■■■□□ 2.72
CTCF-203ENST00000566078 ATG2AQ2TAZ0 1938 aa32.02■■■□□ 2.72
CTCF-203ENST00000566078 MTCL1Q9Y4B5 1905 aaKnown RBP32.02■■■□□ 2.72
CTCF-203ENST00000566078 PSTPIP1O43586 416 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 LRCH4O75427 683 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 PEX5P50542 639 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 RPL10AP62906 217 aaKnown RBP32.01■■■□□ 2.72
CTCF-203ENST00000566078 RAB33AQ14088 237 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 ACAP1Q15027 740 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 CDO1Q16878 200 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 DCAF12L1Q5VU92 463 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 TMC7Q7Z402 723 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 RHOT1Q8IXI2 618 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 DEFB106AQ8N104 65 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 PBKQ96KB5 322 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 GDF15Q99988 308 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 POPDC2Q9HBU9 364 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 RXFP1Q9HBX9 757 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 PCDHA11Q9Y5I1 949 aa32.01■■■□□ 2.72
CTCF-203ENST00000566078 RNF8O76064 485 aa32■■■□□ 2.71
CTCF-203ENST00000566078 LTFP02788 710 aa32■■■□□ 2.71
CTCF-203ENST00000566078 TCF4P15884 667 aa32■■■□□ 2.71
CTCF-203ENST00000566078 DESP17661 470 aa32■■■□□ 2.71
CTCF-203ENST00000566078 GJC1P36383 396 aa32■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms