RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 UXTQ9UBK9 157 aaPredicted RBP18.25■□□□□ 0.51
CLN3-217ENST00000565354 DNAJC12Q9UKB3 198 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 RALGAPA1Q6GYQ0 2036 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 ECI2O75521 394 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 PAEPP09466 180 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 VDRP11473 427 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 GABRR2P28476 465 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 SLC8A3P57103 927 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 APBA1Q02410 837 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 KCNMA1Q12791 1236 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 IFRD2Q12894 506 aaPredicted RBP18.24■□□□□ 0.51
CLN3-217ENST00000565354 RAPGEF1Q13905 1077 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 PPP1R26Q5T8A7 1209 aaPredicted RBP18.24■□□□□ 0.51
CLN3-217ENST00000565354 ZNF852Q6ZMS4 543 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 UBR7Q8N806 425 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 STKLD1Q8NE28 680 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 SPATA17Q96L03 361 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 CEP295NLQ96MC4 621 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 HNRNPABQ99729 332 aaKnown RBP18.24■□□□□ 0.51
CLN3-217ENST00000565354 ATXN3LQ9H3M9 355 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 PARD6AQ9NPB6 346 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 AVENQ9NQS1 362 aaPredicted RBP18.24■□□□□ 0.51
CLN3-217ENST00000565354 HESX1Q9UBX0 185 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 GMEB2Q9UKD1 530 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 KIAA1257Q9ULG3 409 aa18.24■□□□□ 0.51
CLN3-217ENST00000565354 MRPS17Q9Y2R5 130 aaKnown RBP18.24■□□□□ 0.51
CLN3-217ENST00000565354 ACO1P21399 889 aaKnown RBP18.23■□□□□ 0.51
CLN3-217ENST00000565354 CDC25CP30307 473 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 MAP3K7CLP57077 242 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 FZD5Q13467 585 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 SLC5A9Q2M3M2 681 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 ARHGAP15Q53QZ3 475 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 DENND5BQ6ZUT9 1274 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 PAQR9Q6ZVX9 377 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 SLITRK6Q9H5Y7 841 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 ZNF334Q9HCZ1 680 aaPredicted RBP18.23■□□□□ 0.51
CLN3-217ENST00000565354 SIX2Q9NPC8 291 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 HEBP1Q9NRV9 189 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 PTPRDP23468 1912 aa18.23■□□□□ 0.51
CLN3-217ENST00000565354 A0A1W2PRU2 124 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 LRRC10BA6NIK2 292 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 NOL4O94818 638 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 ADRB1P08588 477 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 GJA1P17302 382 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 CEBPBP17676 345 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 CACNA2D1P54289 1103 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 EPHA5P54756 1037 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 MTAPQ13126 283 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 SYCP1Q15431 976 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 ST3GAL2Q16842 350 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 GOLGA7BQ2TAP0 167 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 KLHDC7AQ5VTJ3 777 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 ARHGAP17Q68EM7 881 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 TMC8Q8IU68 726 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 NUP93Q8N1F7 819 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 NEK11Q8NG66 645 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 TCEAL4Q96EI5 215 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 MCRS1Q96EZ8 462 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 KCNK16Q96T55 309 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 PLA2G2FQ9BZM2 168 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 PLCB1Q9NQ66 1216 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 FAM207AQ9NSI2 230 aaPredicted RBP18.22■□□□□ 0.51
CLN3-217ENST00000565354 GDE1Q9NZC3 331 aa18.22■□□□□ 0.51
CLN3-217ENST00000565354 SHISA7A6NL88 538 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 RTN3O95197 1032 aaPredicted RBP18.21■□□□□ 0.51
CLN3-217ENST00000565354 NRLP54845 237 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 STILQ15468 1287 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 TEAD2Q15562 447 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 PRSS36Q5K4E3 855 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 SMOQ99835 787 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 DUSP16Q9BY84 665 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 TSPAN16Q9UKR8 245 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 RAB23Q9ULC3 237 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 FHOD1Q9Y613 1164 aa18.21■□□□□ 0.51
CLN3-217ENST00000565354 MYH10P35580 1976 aa18.21■□□□□ 0.5
CLN3-217ENST00000565354 RNF225M0QZC1 329 aaPredicted RBP18.2■□□□□ 0.5
CLN3-217ENST00000565354 MED7O43513 233 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 MICAL2O94851 1124 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 TDGF1P13385 188 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 UCHL3P15374 230 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 HMGA1P17096 107 aaKnown RBP18.2■□□□□ 0.5
CLN3-217ENST00000565354 BRD2P25440 801 aaKnown RBP18.2■□□□□ 0.5
CLN3-217ENST00000565354 GNA15P30679 374 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 CCR2P41597 374 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 KLK7P49862 253 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 ZNF445P59923 1031 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 FANCCQ00597 558 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 CLEC20AQ6ZU45 233 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 ZNF687Q8N1G0 1237 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 RNF214Q8ND24 703 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 SHKBP1Q8TBC3 707 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 SHC3Q92529 594 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 MRPS31Q92665 395 aaKnown RBP18.2■□□□□ 0.5
CLN3-217ENST00000565354 DNASE1L2Q92874 299 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 TRMT2BQ96GJ1 504 aaKnown RBP18.2■□□□□ 0.5
CLN3-217ENST00000565354 SLITRK1Q96PX8 696 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 SPAG5Q96R06 1193 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 LRRC3Q9BY71 257 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 GPR88Q9GZN0 384 aa18.2■□□□□ 0.5
CLN3-217ENST00000565354 CSNK1G1Q9HCP0 422 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms