RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 FILIP1Q7Z7B0 1213 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 DDX42Q86XP3 938 aaKnown RBP eCLIP23.81■■□□□ 1.4
CLN3-215ENST00000565236 EEF2KMTQ96G04 330 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 SMOQ99835 787 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 DNAI2Q9GZS0 605 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 TMEM8AQ9HCN3 771 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 FAM49BQ9NUQ9 324 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 CFAP97Q9P2B7 532 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 MYH10P35580 1976 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 MAP3K7CLP57077 242 aa23.8■■□□□ 1.4
CLN3-215ENST00000565236 KRT39Q6A163 491 aa23.8■■□□□ 1.4
CLN3-215ENST00000565236 ADGRG2Q8IZP9 1017 aa23.8■■□□□ 1.4
CLN3-215ENST00000565236 GSDMAQ96QA5 445 aa23.8■■□□□ 1.4
CLN3-215ENST00000565236 NT5C1AQ9BXI3 368 aa23.8■■□□□ 1.4
CLN3-215ENST00000565236 NIF3L1Q9GZT8 377 aa23.8■■□□□ 1.4
CLN3-215ENST00000565236 APOBEC3GQ9HC16 384 aaKnown RBP23.8■■□□□ 1.4
CLN3-215ENST00000565236 COCHO43405 550 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 BEST1O76090 585 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 SMC2O95347 1197 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 EPB41P11171 864 aaKnown RBP23.79■■□□□ 1.4
CLN3-215ENST00000565236 ADORA2BP29275 332 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 HOXC13P31276 330 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 PRCPP42785 496 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 INCA1Q0VD86 236 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 SRSF5Q13243 272 aaKnown RBP23.79■■□□□ 1.4
CLN3-215ENST00000565236 SNX30Q5VWJ9 437 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 CEP68Q76N32 757 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 WDR5BQ86VZ2 330 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 ZMIZ2Q8NF64 920 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 RMDN1Q96DB5 314 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 CYFIP2Q96F07 1278 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 FBXO44Q9H4M3 255 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 CSNK1G1Q9HCP0 422 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 GMIPQ9P107 970 aa23.79■■□□□ 1.4
CLN3-215ENST00000565236 HOOK1Q9UJC3 728 aaKnown RBP23.79■■□□□ 1.4
CLN3-215ENST00000565236 DCHS1Q96JQ0 3298 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 FAM92AA1XBS5 289 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 SCAMP3O14828 347 aaKnown RBP23.78■■□□□ 1.4
CLN3-215ENST00000565236 STX10O60499 249 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 FAM200BP0CF97 657 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 CD58P19256 250 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 ZNF658Q5TYW1 1059 aaPredicted RBP23.78■■□□□ 1.4
CLN3-215ENST00000565236 ENGASEQ8NFI3 743 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 RPLP0P6Q8NHW5 317 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 CCDC26Q8TAB7 109 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 TWNKQ96RR1 684 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 HNRNPABQ99729 332 aaKnown RBP23.78■■□□□ 1.4
CLN3-215ENST00000565236 TSG101Q99816 390 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 CCSER2Q9H7U1 834 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 TBC1D14Q9P2M4 693 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 CEP250Q9BV73 2442 aa23.78■■□□□ 1.4
CLN3-215ENST00000565236 ZDHHC11BP0C7U3 371 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 PXNP49023 591 aaPredicted RBP23.77■■□□□ 1.4
CLN3-215ENST00000565236 TUBP50607 506 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 MCCD1P59942 119 aaPredicted RBP23.77■■□□□ 1.4
CLN3-215ENST00000565236 FOXK2Q01167 660 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 DHCR24Q15392 516 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 ERMP1Q7Z2K6 904 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 CAMKK1Q8N5S9 505 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 EZH1Q92800 747 aaPredicted RBP23.77■■□□□ 1.4
CLN3-215ENST00000565236 SMARCE1Q969G3 411 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 NACA2Q9H009 215 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 USP18Q9UMW8 372 aa23.77■■□□□ 1.4
CLN3-215ENST00000565236 CCDC163A0A0D9SF12 145 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 E2F8A0AVK6 867 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 CILPO75339 1184 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 CYP17A1P05093 508 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 RETP07949 1114 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 OPRD1P41143 372 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 MXI1P50539 228 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.76■■□□□ 1.39
CLN3-215ENST00000565236 FBXL13Q8NEE6 735 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 ACDQ96AP0 544 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 TIGD1Q96MW7 591 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 GTPBP4Q9BZE4 634 aaKnown RBP23.76■■□□□ 1.39
CLN3-215ENST00000565236 TLR8Q9NR97 1041 aaKnown RBP23.76■■□□□ 1.39
CLN3-215ENST00000565236 POLR3BQ9NW08 1133 aaPredicted RBP23.76■■□□□ 1.39
CLN3-215ENST00000565236 SH3BP1Q9Y3L3 701 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 PCDHA5Q9Y5H7 936 aa23.76■■□□□ 1.39
CLN3-215ENST00000565236 ADH1CP00326 375 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 FKBP3Q00688 224 aaKnown RBP23.75■■□□□ 1.39
CLN3-215ENST00000565236 SPEM2Q0P670 501 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 PUM1Q14671 1186 aaKnown RBP eCLIP23.75■■□□□ 1.39
CLN3-215ENST00000565236 COBLL1Q53SF7 1204 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 RHBDF2Q6PJF5 856 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 CLEC20AQ6ZU45 233 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 SYT13Q7L8C5 426 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 WHAMMQ8TF30 809 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 SEMA4DQ92854 862 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 ERCC4Q92889 916 aaPredicted RBP23.75■■□□□ 1.39
CLN3-215ENST00000565236 JAKMIP2Q96AA8 810 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 RAB20Q9NX57 234 aa23.75■■□□□ 1.39
CLN3-215ENST00000565236 TGM1P22735 817 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 GAB4Q2WGN9 574 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 TCERG1LQ5VWI1 586 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 ANKRD40Q6AI12 368 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 TTC39CQ8N584 583 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 SPATA20Q8TB22 786 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 GAB3Q8WWW8 586 aa23.74■■□□□ 1.39
CLN3-215ENST00000565236 OTUB2Q96DC9 234 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms