RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CYFIP2Q96F07 1278 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 HNRNPABQ99729 332 aaKnown RBP17.84■□□□□ 0.45
CLK3-210ENST00000563112 SMOQ99835 787 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 LINC00597Q9H2U6 94 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 FBXO44Q9H4M3 255 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 RAB20Q9NX57 234 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 SMPD4Q9NXE4 827 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 IL37Q9NZH6 218 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 OTOGLQ3ZCN5 2332 aa17.84■□□□□ 0.45
CLK3-210ENST00000563112 HELZP42694 1942 aaKnown RBP17.84■□□□□ 0.45
CLK3-210ENST00000563112 CILPO75339 1184 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 TDGF1P13385 188 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 FBXO43Q4G163 708 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 DCAF17Q5H9S7 520 aaPredicted RBP17.83■□□□□ 0.44
CLK3-210ENST00000563112 HECTD3Q5T447 861 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 CD101Q93033 1021 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 DHTKD1Q96HY7 919 aaPredicted RBP17.83■□□□□ 0.44
CLK3-210ENST00000563112 EPC1Q9H2F5 836 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 CSNK1G1Q9HCP0 422 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 NCDNQ9UBB6 729 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 RAB23Q9ULC3 237 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 CIZ1Q9ULV3 898 aaPredicted RBP17.83■□□□□ 0.44
CLK3-210ENST00000563112 CFAP54Q96N23 3096 aa17.83■□□□□ 0.44
CLK3-210ENST00000563112 FAM92AA1XBS5 289 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 SNX30Q5VWJ9 437 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 ZMIZ2Q8NF64 920 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 CCDC26Q8TAB7 109 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 TWNKQ96RR1 684 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 NACA2Q9H009 215 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 GMIPQ9P107 970 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 CFAP97Q9P2B7 532 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 TBC1D14Q9P2M4 693 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 ARMCX3Q9UH62 379 aaPredicted RBP17.82■□□□□ 0.44
CLK3-210ENST00000563112 GPR179Q6PRD1 2367 aa17.82■□□□□ 0.44
CLK3-210ENST00000563112 BEST1O76090 585 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 EGFP01133 1207 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 CNR2P34972 360 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 TUBP50607 506 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 ZXDBP98169 803 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 ISM2Q6H9L7 571 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 CLEC20AQ6ZU45 233 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 FILIP1Q7Z7B0 1213 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 LONP2Q86WA8 852 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 ZC3H3Q8IXZ2 948 aaKnown RBP17.81■□□□□ 0.44
CLK3-210ENST00000563112 SEMA4DQ92854 862 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 CHFRQ96EP1 664 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 HEXIM2Q96MH2 286 aaKnown RBP17.81■□□□□ 0.44
CLK3-210ENST00000563112 FAM124BQ9H5Z6 455 aaPredicted RBP17.81■□□□□ 0.44
CLK3-210ENST00000563112 METTL14Q9HCE5 456 aaKnown RBP17.81■□□□□ 0.44
CLK3-210ENST00000563112 TLR8Q9NR97 1041 aaKnown RBP17.81■□□□□ 0.44
CLK3-210ENST00000563112 SMG5Q9UPR3 1016 aaKnown RBP17.81■□□□□ 0.44
CLK3-210ENST00000563112 SLC8A2Q9UPR5 921 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 SH3BP1Q9Y3L3 701 aa17.81■□□□□ 0.44
CLK3-210ENST00000563112 TRIM49BA6NDI0 452 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 CHURC1-FNTBB4DL54 471 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 K7ESF4 209 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 COCHO43405 550 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 RNF40O75150 1001 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 ZDHHC11BP0C7U3 371 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 HOXA6P31267 233 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 FNTBP49356 437 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 PMS1P54277 932 aaKnown RBP17.8■□□□□ 0.44
CLK3-210ENST00000563112 ZNF394Q53GI3 561 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 HEATR6Q6AI08 1181 aaKnown RBP17.8■□□□□ 0.44
CLK3-210ENST00000563112 ADGRG2Q8IZP9 1017 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 WHAMMQ8TF30 809 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 JAKMIP2Q96AA8 810 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 CCSER2Q9H7U1 834 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 FBRSL1Q9HCM7 1045 aaKnown RBP17.8■□□□□ 0.44
CLK3-210ENST00000563112 PNPLA8Q9NP80 782 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 CISHQ9NSE2 258 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 MAN1B1Q9UKM7 699 aa17.8■□□□□ 0.44
CLK3-210ENST00000563112 ATG2BQ96BY7 2078 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 FRYLO94915 3013 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 E2F8A0AVK6 867 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 ACO1P21399 889 aaKnown RBP17.79■□□□□ 0.44
CLK3-210ENST00000563112 YWHAEP62258 255 aaKnown RBP17.79■□□□□ 0.44
CLK3-210ENST00000563112 CCDC40Q4G0X9 1142 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 KIAA2013Q8IYS2 634 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 DCLK2Q8N568 766 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 GPR161Q8N6U8 529 aaKnown RBP17.79■□□□□ 0.44
CLK3-210ENST00000563112 OTUB2Q96DC9 234 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 TMEM176AQ96HP8 235 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 CEP63Q96MT8 703 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 DUSP16Q9BY84 665 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 GMEB2Q9UKD1 530 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 SCML2Q9UQR0 700 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 COQ4Q9Y3A0 265 aa17.79■□□□□ 0.44
CLK3-210ENST00000563112 BICDL2A1A5D9 508 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 TLR5O60602 858 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 GADD45BO75293 160 aaPredicted RBP17.78■□□□□ 0.44
CLK3-210ENST00000563112 ADH1CP00326 375 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 CYP17A1P05093 508 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 SLC8A3P57103 927 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 SIM2Q14190 667 aaPredicted RBP17.78■□□□□ 0.44
CLK3-210ENST00000563112 DHCR24Q15392 516 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 CBWD6Q4V339 395 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 CBWD3Q5JTY5 395 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 CBWD5Q5RIA9 395 aa17.78■□□□□ 0.44
CLK3-210ENST00000563112 PPP1R26Q5T8A7 1209 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms