RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PDGFRAP16234 1089 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 OR1D2P34982 312 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 CTNNA1P35221 906 aaKnown RBP11.77□□□□□ -0.53
USP3-218ENST00000560202 DAOAP59103 153 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 ROR1Q01973 937 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 SHHQ15465 462 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 DAB2IPQ5VWQ8 1189 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 TRNP1Q6NT89 227 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 CC2D1AQ6P1N0 951 aaPredicted RBP11.77□□□□□ -0.53
USP3-218ENST00000560202 GPR65Q8IYL9 337 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 UBL4BQ8N7F7 174 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 KLHL23Q8NBE8 558 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 KRT35Q92764 455 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 PBKQ96KB5 322 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 C8orf48Q96LL4 319 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 RNPC3Q96LT9 517 aaKnown RBP11.77□□□□□ -0.53
USP3-218ENST00000560202 CNPY3Q9BT09 278 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 PCDHA3Q9Y5H8 950 aa11.77□□□□□ -0.53
USP3-218ENST00000560202 WDR27A2RRH5 827 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 CES2O00748 559 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 DPYSL4O14531 572 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 TNFRSF10BO14763 440 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 TRIM66O15016 1216 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 SART1O43290 800 aaKnown RBP11.76□□□□□ -0.53
USP3-218ENST00000560202 HSF2BPO75031 334 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 ZBED1O96006 694 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 GLI1P08151 1106 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 USP17L7P0C7H9 530 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 HAPLN1P10915 354 aaPredicted RBP11.76□□□□□ -0.53
USP3-218ENST00000560202 DNAJB2P25686 324 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 BMPR1AP36894 532 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 SSR1P43307 286 aaKnown RBP11.76□□□□□ -0.53
USP3-218ENST00000560202 MARCKSL1P49006 195 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 PEX5P50542 639 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 SLC5A3P53794 718 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 TAS2R40P59535 323 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 YWHAZP63104 245 aaKnown RBP11.76□□□□□ -0.53
USP3-218ENST00000560202 ACAP1Q15027 740 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 DDR2Q16832 855 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 CCDC14Q49A88 953 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 PM20D1Q6GTS8 502 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 CREG2Q8IUH2 290 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 RHOT1Q8IXI2 618 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 SCML4Q8N228 414 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 TTC9BQ8N6N2 239 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 ALG3Q92685 438 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 FAM149B1Q96BN6 582 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 CAPZA3Q96KX2 299 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 ZBP1Q9H171 429 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 CRISPLD1Q9H336 500 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 MRPL17Q9NRX2 175 aaKnown RBP11.76□□□□□ -0.53
USP3-218ENST00000560202 ASNSD1Q9NWL6 643 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 SLC27A5Q9Y2P5 690 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 USP3Q9Y6I4 520 aa11.76□□□□□ -0.53
USP3-218ENST00000560202 LINC01553A4QN01 128 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 PSTPIP1O43586 416 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 LILRB3O75022 631 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 CTSAP10619 480 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SDC4P31431 198 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 CTNNB1P35222 781 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 GPR15P49685 360 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 DUSP4Q13115 394 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 MGAT5BQ3V5L5 792 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 TNS4Q8IZW8 715 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 ARFGAP1Q8N6T3 406 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SCAMP5Q8TAC9 235 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 ZNF461Q8TAF7 563 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 AUTS2Q8WXX7 1259 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 IRGQQ8WZA9 623 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 CFAP57Q96MR6 1250 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SEPT5Q99719 369 aaPredicted RBP11.75□□□□□ -0.53
USP3-218ENST00000560202 DDX23Q9BUQ8 820 aaKnown RBP11.75□□□□□ -0.53
USP3-218ENST00000560202 CARD6Q9BX69 1037 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 CARD9Q9H257 536 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP3-218ENST00000560202 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP3-218ENST00000560202 RNF14Q9UBS8 474 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 AFF4Q9UHB7 1163 aaKnown RBP11.75□□□□□ -0.53
USP3-218ENST00000560202 SSX2IPQ9Y2D8 614 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP3-218ENST00000560202 RWDD3Q9Y3V2 267 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 NLRC5Q86WI3 1866 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 MYH10P35580 1976 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 YJEFN3A6XGL0 299 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 GRXCR1A8MXD5 290 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 E7ENQ6 273 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 CEP104O60308 925 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 LRCH4O75427 683 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 DAB1O75553 588 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SOAT2O75908 522 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 RNF8O76064 485 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 ABLIM3O94929 683 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 SLU7O95391 586 aaKnown RBP11.75□□□□□ -0.53
USP3-218ENST00000560202 MYOGP15173 224 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 TCF4P15884 667 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 DESP17661 470 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 MATKP42679 507 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 PTPN9P43378 593 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 RWDD2BP57060 319 aa11.75□□□□□ -0.53
USP3-218ENST00000560202 RAB33AQ14088 237 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms