RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SLC4A5Q9BY07 1137 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 UBE2ZQ9H832 354 aaPredicted RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 TLR8Q9NR97 1041 aaKnown RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 TMEM51Q9NW97 253 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 IL37Q9NZH6 218 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 SCML2Q9UQR0 700 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CLUHO75153 1309 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 HHLA1C9JL84 531 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 TNFRSF10BO14763 440 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 SOAT2O75908 522 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 BEST1O76090 585 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 ZBED1O96006 694 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CALCAP01258 141 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 GLI1P08151 1106 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 MYBL1P10243 752 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 RALAP11233 206 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 MYL4P12829 197 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 UNGP13051 313 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 LCP1P13796 627 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 DESP17661 470 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 SSTR3P32745 418 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 SCNN1AP37088 669 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 GABRB2P47870 512 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 GPR15P49685 360 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 RGS7P49802 495 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CDR1P51861 262 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 EPHA5P54756 1037 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CENPCQ03188 943 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 IFRD2Q12894 506 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 PDCLQ13371 301 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 ZNF268Q14587 947 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 SPA17Q15506 151 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 SLC18A3Q16572 532 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 EFHC1Q5JVL4 640 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CCDC122Q5T0U0 273 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 SDHAF4Q5VUM1 108 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 NAA35Q5VZE5 725 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 PM20D1Q6GTS8 502 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 OR6B2Q6IFH4 312 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 PMF1Q6P1K2 205 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 WDR59Q6PJI9 974 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 TOGARAM2Q6ZUX3 1019 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CCDC186Q7Z3E2 898 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 PHF13Q86YI8 300 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 C12orf76Q8N812 135 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 CPA5Q8WXQ8 436 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 MSLNLQ96KJ4 702 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 BAG1Q99933 345 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 NHEJ1Q9H9Q4 299 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 ADAM22Q9P0K1 906 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CLEC1BQ9P126 229 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 ARHGAP20Q9P2F6 1191 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 ADAMTS1Q9UHI8 967 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 MRPS23Q9Y3D9 190 aaKnown RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 USP3Q9Y6I4 520 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 ZFP37Q9Y6Q3 630 aaPredicted RBP9.71□□□□□ -0.86
LDLR-210ENST00000559340 NCANO14594 1321 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 CDH23Q9H251 3354 aa9.71□□□□□ -0.86
LDLR-210ENST00000559340 VCANP13611 3396 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 FAM92AA1XBS5 289 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 ANKRD62A6NC57 917 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 DDX3XO00571 662 aaKnown RBP eCLIP9.7□□□□□ -0.86
LDLR-210ENST00000559340 TBX10O75333 385 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 FTLP02792 175 aaPredicted RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 RHOP08100 348 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 HMGA1P17096 107 aaKnown RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 KCNA5P22460 613 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 FECHP22830 423 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 MMP8P22894 467 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 FSHRP23945 695 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 GABRR2P28476 465 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 LTBRP36941 435 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 CACNA2D1P54289 1103 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 RBM10P98175 930 aaKnown RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 C1QBPQ07021 282 aaKnown RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 GOLGA8FQ08AF8 430 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 GOLGA8DPQ0D2H9 430 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 ADIGQ0VDE8 80 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 TAF10Q12962 218 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 SMAD4Q13485 552 aaKnown RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 LEXMQ3ZCV2 418 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 BTBD8Q5XKL5 378 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 E4F1Q66K89 784 aaPredicted RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 ALKBH5Q6P6C2 394 aaKnown RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 GRASPQ7Z6J2 395 aaPredicted RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 GPIHBP1Q8IV16 184 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 ZNF276Q8N554 614 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 WDTC1Q8N5D0 677 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 SCAMP5Q8TAC9 235 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 SLC30A5Q8TAD4 765 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 GPR152Q8TDT2 470 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 ZNF707Q96C28 371 aaPredicted RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 PCDHB18PQ96TA0 734 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 CHP1Q99653 195 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 SYT11Q9BT88 431 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 ULBP1Q9BZM6 244 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 S1PR5Q9H228 398 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 ATXN3LQ9H3M9 355 aa9.7□□□□□ -0.86
LDLR-210ENST00000559340 MRPL47Q9HD33 250 aaKnown RBP9.7□□□□□ -0.86
LDLR-210ENST00000559340 WDR6Q9NNW5 1121 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms