RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 MED7O43513 233 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 MOSPD3O75425 235 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 PAEPP09466 180 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 CD19P15391 556 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 NPR3P17342 541 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 FCARP24071 287 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 ADORA2BP29275 332 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 RPS9P46781 194 aaKnown RBP9.15□□□□□ -0.94
USP3-208ENST00000558285 BCAT1P54687 386 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 NRLP54845 237 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 MFAP3P55082 362 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 GCNT1Q02742 428 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 GRSF1Q12849 480 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP3-208ENST00000558285 IFRD2Q12894 506 aaPredicted RBP9.15□□□□□ -0.94
USP3-208ENST00000558285 TAF10Q12962 218 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 MTF1Q14872 753 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 TXNDC8Q6A555 127 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 ZNF771Q7L3S4 317 aaPredicted RBP9.15□□□□□ -0.94
USP3-208ENST00000558285 PPM1KQ8N3J5 372 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 ERCC4Q92889 916 aaPredicted RBP9.15□□□□□ -0.94
USP3-208ENST00000558285 EEF2KMTQ96G04 330 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 FAM84AQ96KN4 292 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 FAM126AQ9BYI3 521 aaPredicted RBP9.15□□□□□ -0.94
USP3-208ENST00000558285 DPEP3Q9H4B8 488 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 THAP9Q9H5L6 903 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 LTB4R2Q9NPC1 389 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 DUS2Q9NX74 493 aaKnown RBP9.15□□□□□ -0.94
USP3-208ENST00000558285 SH3BP1Q9Y3L3 701 aa9.15□□□□□ -0.94
USP3-208ENST00000558285 KRBA1A5PL33 1030 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 ZNF840PA6NDX5 716 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 SART1O43290 800 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 ADH1CP00326 375 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SETSIPP0DME0 302 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 MBL2P11226 248 aaPredicted RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 VDRP11473 427 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 GPR15P49685 360 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SLC5A3P53794 718 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 STX17P56962 302 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 MAP3K7CLP57077 242 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SLC7A9P82251 487 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 KCNH2Q12809 1159 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 FBXO43Q4G163 708 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 C1orf220Q5T0J3 134 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SDHAF4Q5VUM1 108 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 ARHGAP17Q68EM7 881 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SPOPLQ6IQ16 392 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 GBP6Q6ZN66 633 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 FUKQ8N0W3 1084 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 PCMTD1Q96MG8 357 aaPredicted RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 RPP25Q9BUL9 199 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 DDX23Q9BUQ8 820 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 DUSP16Q9BY84 665 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 LRRC4Q9HBW1 653 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 CSNK1G1Q9HCP0 422 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.14□□□□□ -0.952e-22■■■■■ 279.5
USP3-208ENST00000558285 HEBP1Q9NRV9 189 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 FAM49BQ9NUQ9 324 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 ANO10Q9NW15 660 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SPATA6Q9NWH7 488 aaPredicted RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 FBXO4Q9UKT5 387 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 STRIP2Q9ULQ0 834 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 ZNF510Q9Y2H8 683 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 PCDHB4Q9Y5E5 795 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 PRUNE2Q8WUY3 3088 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 GTPBP10A4D1E9 387 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 TULP2O00295 520 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 CCDC130P13994 396 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 ATP5C1P36542 298 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 CCR3P51677 355 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 PMS1P54277 932 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 VCPP55072 806 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 RUNX3Q13761 415 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 TMCO4Q5TGY1 634 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SNX30Q5VWJ9 437 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 BTBD8Q5XKL5 378 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 CWF19L1Q69YN2 538 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 TRIM59Q8IWR1 403 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SIX6OS1Q8N1H7 587 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 TMEM105Q8N8V8 129 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 ANKRD52Q8NB46 1076 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 EHBP1Q8NDI1 1231 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 TTC16Q8NEE8 873 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 OSCP1Q8WVF1 389 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 USP13Q92995 863 aaPredicted RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 SECISBP2LQ93073 1101 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 CNOT6LQ96LI5 555 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 NOX5Q96PH1 765 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 SMOC2Q9H3U7 446 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 GKN1Q9NS71 199 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 OLA1Q9NTK5 396 aaKnown RBP9.14□□□□□ -0.95
USP3-208ENST00000558285 SCML2Q9UQR0 700 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 CEP83Q9Y592 693 aa9.14□□□□□ -0.95
USP3-208ENST00000558285 TECTAO75443 2155 aa9.13□□□□□ -0.95
USP3-208ENST00000558285 E2F8A0AVK6 867 aa9.13□□□□□ -0.95
USP3-208ENST00000558285 SPECC1L-ADORA2AF8WAN1 911 aa9.13□□□□□ -0.95
USP3-208ENST00000558285 CLDN5O00501 218 aa9.13□□□□□ -0.95
USP3-208ENST00000558285 PES1O00541 588 aaKnown RBP9.13□□□□□ -0.95
USP3-208ENST00000558285 ZBTB24O43167 697 aaPredicted RBP9.13□□□□□ -0.95
USP3-208ENST00000558285 CTIFO43310 598 aaKnown RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms