RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ZNF236Q9UL36 1845 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 TMEM110-MUSTN1A8MSY1 372 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 MATN2O00339 956 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 CLDN3O15551 220 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 TRMUO75648 421 aaKnown RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 ADORA2AP29274 412 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 HOXD12P35452 270 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 SLC12A3P55017 1021 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 CREB5Q02930 508 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 USP41Q3LFD5 358 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 IZUMO3Q5VZ72 239 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 KLHL35Q6PF15 583 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 DHRS4L2Q6PKH6 230 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 TRIM67Q6ZTA4 783 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 GPR142Q7Z601 462 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 AHI1Q8N157 1196 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 C4orf33Q8N1A6 199 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 ICA1LQ8NDH6 482 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 RBM15BQ8NDT2 890 aaKnown RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 C1orf54Q8WWF1 131 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 ABHD8Q96I13 439 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 BIRC8Q96P09 236 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 ZNF696Q9H7X3 374 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 DNAJC17Q9NVM6 304 aaKnown RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 TAGLN3Q9UI15 199 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 NPHP3-ACAD11A0A0J9YXS1 232 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 E9PMD0 336 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 H3BRJ5 948 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 KLF11O14901 512 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 TNFAIP8O95379 198 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 ALDH2P05091 517 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 CYP1A2P05177 515 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 KCNA2P16389 499 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 RRM1P23921 792 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 RPA1P27694 616 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 PPIDQ08752 370 aaKnown RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 MSLNQ13421 630 aaPredicted RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 LPIN1Q14693 890 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 CCDC142Q17RM4 750 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 SFT2D3Q587I9 215 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 SYCP2LQ5T4T6 812 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 TSHZ1Q6ZSZ6 1077 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 PATL1Q86TB9 770 aaKnown RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 ZNF564Q8TBZ8 553 aaPredicted RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 HNRNPABQ99729 332 aaKnown RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 FBXO6Q9NRD1 293 aaPredicted RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 TBC1D22BQ9NU19 505 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 SORCS3Q9UPU3 1222 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 R3HDM2Q9Y2K5 976 aaKnown RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 TMEM98Q9Y2Y6 226 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 IVNS1ABPQ9Y6Y0 642 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 TRIM43BA6NCK2 446 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 LRRN2O75325 713 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 STK10O94804 968 aaKnown RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 PLS3P13797 630 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 KRT4P19013 534 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 HOXD13P35453 343 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 PIK3CAP42336 1068 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 PRKD1Q15139 912 aaPredicted RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 CCNG2Q16589 344 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 NADK2Q4G0N4 442 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 LRRC8BQ6P9F7 803 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 PACS1Q6VY07 963 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 MIER3Q7Z3K6 550 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 ERI1Q8IV48 349 aaKnown RBP11.34□□□□□ -0.59
USP3-206ENST00000558157 FAM186BQ8IYM0 893 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 SPIRE2Q8WWL2 714 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 PLGRKTQ9HBL7 147 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 ARHGEF38Q9NXL2 777 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 GTF3C4Q9UKN8 822 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 AK5Q9Y6K8 562 aa11.34□□□□□ -0.59
USP3-206ENST00000558157 HTR3EA5X5Y0 456 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 SPATA31C2B4DYI2 1134 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 POC1B-GALNT4F8VUJ3 575 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 AOC2O75106 756 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 CCNE2O96020 404 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ALOX15P16050 662 aaPredicted RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 DLG1Q12959 904 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ZNF792Q3KQV3 632 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ARSHQ5FYA8 562 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 EFHC2Q5JST6 749 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 EFHC1Q5JVL4 640 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ANO5Q75V66 913 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 EEPD1Q7L9B9 569 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 PLEKHH3Q7Z736 793 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 PALB2Q86YC2 1186 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 CEP70Q8NHQ1 597 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 ZFP28Q8NHY6 868 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 SNRNP27Q8WVK2 155 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 CDHR1Q96JP9 859 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 CYTH2Q99418 400 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 LBHD1Q9BQE6 289 aaPredicted RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 INTS2Q9H0H0 1204 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 BCAS3Q9H6U6 928 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 TUFT1Q9NNX1 390 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 INIPQ9NRY2 104 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 CHST7Q9NS84 486 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 DDX18Q9NVP1 670 aaKnown RBP11.33□□□□□ -0.6
USP3-206ENST00000558157 RAB26Q9ULW5 256 aa11.33□□□□□ -0.6
USP3-206ENST00000558157 FADS3Q9Y5Q0 445 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms