RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CTC1Q2NKJ3 1217 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 RIOX2Q8IUF8 465 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 OTUD5Q96G74 571 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 FDXACB1Q9BRP7 624 aaPredicted RBP13.45□□□□□ -0.26
LDLR-207ENST00000558013 B3GNT5Q9BYG0 378 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 MANSC1Q9H8J5 431 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 HEY2Q9UBP5 337 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.45□□□□□ -0.26
LDLR-207ENST00000558013 LPXNO60711 386 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 MT-ND3P03897 115 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 HMGCRP04035 888 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 ATP2A2P16615 1042 aaKnown RBP13.45□□□□□ -0.26
LDLR-207ENST00000558013 IL4RP24394 825 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 PHBP35232 272 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 NDST1P52848 882 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 SLC18A1P54219 525 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 ATXN1P54253 815 aaKnown RBP13.45□□□□□ -0.26
LDLR-207ENST00000558013 BMPR2Q13873 1038 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 ANKRD20A2Q5SQ80 823 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 CELF3Q5SZQ8 465 aaKnown RBP13.45□□□□□ -0.26
LDLR-207ENST00000558013 ANKRD20A1Q5TYW2 823 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 ANKRD20A3Q5VUR7 823 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 FAM183BPQ6ZVS7 135 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 PCGF5Q86SE9 256 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 SCUBE3Q8IX30 993 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 CTAGE3PQ8IX95 158 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 MCRS1Q96EZ8 462 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 FAM167BQ9BTA0 163 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 DENND2DQ9H6A0 471 aaPredicted RBP13.45□□□□□ -0.26
LDLR-207ENST00000558013 PLAC1Q9HBJ0 212 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 ARL8BQ9NVJ2 186 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 KCNN4O15554 427 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 PEX11AO75192 247 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 ZWINTO95229 277 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 RBL1P28749 1068 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 ALDH3A1P30838 453 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 ROR1Q01973 937 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 SLC10A6Q3KNW5 377 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 CES4AQ5XG92 561 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 PPM1NQ8N819 430 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 FAF2Q96CS3 445 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 USP29Q9HBJ7 922 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 NGRNQ9NPE2 291 aaKnown RBP13.44□□□□□ -0.26
LDLR-207ENST00000558013 MCM3APO60318 1980 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 CYB561D2O14569 222 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 MED7O43513 233 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 SERPINB3P29508 390 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 SKIV2L2P42285 1042 aaKnown RBP13.44□□□□□ -0.26
LDLR-207ENST00000558013 APOBEC3FQ8IUX4 373 aaKnown RBP13.44□□□□□ -0.26
LDLR-207ENST00000558013 TTC13Q8NBP0 860 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 CCDC110Q8TBZ0 833 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 FNIP1Q8TF40 1166 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 ELP3Q9H9T3 547 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 KCNK13Q9HB14 408 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 FAM49BQ9NUQ9 324 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 ARMCX1Q9P291 453 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 TEX264Q9Y6I9 313 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 PPEF2O14830 753 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 DCTN3O75935 186 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 APRTP07741 180 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 NEFHP12036 1026 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 GRIA1P42261 906 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 PPP6R3Q5H9R7 873 aaPredicted RBP13.44□□□□□ -0.26
LDLR-207ENST00000558013 HPDLQ96IR7 371 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 CYTH2Q99418 400 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 SLC13A1Q9BZW2 595 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 SMYD2Q9NRG4 433 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 PIH1D1Q9NWS0 290 aaKnown RBP13.44□□□□□ -0.26
LDLR-207ENST00000558013 SLC5A4Q9NY91 659 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 TSPAN16Q9UKR8 245 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 EFR3BQ9Y2G0 817 aa13.44□□□□□ -0.26
LDLR-207ENST00000558013 FAM237BA0A1B0GVD1 139 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 ADM5C9JUS6 153 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 CNMDO75829 334 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 PFKMP08237 780 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 TGFB3P10600 412 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 YY1P25490 414 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 ETV4P43268 484 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 ZNF143P52747 638 aaPredicted RBP13.43□□□□□ -0.26
LDLR-207ENST00000558013 ZNF200P98182 395 aaPredicted RBP13.43□□□□□ -0.26
LDLR-207ENST00000558013 KCNJ11Q14654 390 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 KLHL38Q2WGJ6 581 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 SH3D19Q5HYK7 790 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 PMF1Q6P1K2 205 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 DSTYKQ6XUX3 929 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 SH2D5Q6ZV89 423 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 PLD5Q8N7P1 536 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 TSSK1BQ9BXA7 367 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 CCDC195A0A1B0GUA6 201 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 C2CD4BA6NLJ0 364 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 C2CD2LO14523 706 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 TXNP10599 105 aaKnown RBP13.43□□□□□ -0.26
LDLR-207ENST00000558013 NOMO1Q15155 1222 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 AMHR2Q16671 573 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 CCDC14Q49A88 953 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 TRIM68Q6AZZ1 485 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 ILDR2Q71H61 639 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 UNC5BQ8IZJ1 945 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 PQLC3Q8N755 202 aa13.43□□□□□ -0.26
LDLR-207ENST00000558013 MIEF2Q96C03 454 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms