RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 VSX1Q9NZR4 365 aaPredicted RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 NDUFAF4Q9P032 175 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PI4KBQ9UBF8 816 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 DNAJB11Q9UBS4 358 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 CNTN6Q9UQ52 1028 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 DNAJC16Q9Y2G8 782 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 DERAQ9Y315 318 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 SH3D21A4FU49 640 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 C9orf118A6NHY6 69 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 DRGXA6NNA5 263 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 KIF28PB7ZC32 967 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 F5H0A9 414 aaPredicted RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 CD3EAPO15446 510 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 DHHO43323 396 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 USO1O60763 962 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 TMCC2O75069 709 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ZBED4O75132 1171 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 CNPP09543 421 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 GNAT2P19087 354 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 HK1P19367 917 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 SERPINA4P29622 427 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 RAD52P43351 418 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 MAGEA10P43363 369 aaPredicted RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 RBM5P52756 815 aaKnown RBP eCLIP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ATXN1P54253 815 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 DRG2P55039 364 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 NAP1L1P55209 391 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 RAC3P60763 192 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 MC2RQ01718 297 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ZNF844Q08AG5 666 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 GALNT2Q10471 571 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 PDCLQ13371 301 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ANKRD1Q15327 319 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 SMAD1Q15797 465 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 FAM205BPQ63HN1 556 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 TTLL5Q6EMB2 1281 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 CARFQ8N187 725 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ABHD5Q8WTS1 349 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 TMEM171Q8WVE6 324 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 WDR60Q8WVS4 1066 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 HMGB4Q8WW32 186 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 TMEM176AQ96HP8 235 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 GPR20Q99678 358 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 NUDT16L1Q9BRJ7 211 aaKnown RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ABHD16BQ9H3Z7 469 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 ACAD9Q9H845 621 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 PRKRIP1Q9H875 184 aaPredicted RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 NOD2Q9HC29 1040 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 GBA2Q9HCG7 927 aaPredicted RBP3.54□□□□□ -1.84
TRAV28-201ENST00000557548 KRT84Q9NSB2 600 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 VPS51Q9UID3 782 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 HSF4Q9ULV5 492 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 TBX20Q9UMR3 447 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 GPR34Q9UPC5 381 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 CNPY2Q9Y2B0 182 aa3.54□□□□□ -1.84
TRAV28-201ENST00000557548 CCDC195A0A1B0GUA6 201 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 PMS2P1A4D2B8 440 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 VWA3AA6NCI4 1184 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 EFCAB8A8MWE9 144 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 AGPSO00116 658 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SPTLC2O15270 562 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 KLK10O43240 276 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 B4GALT4O60513 344 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CDC14BO60729 498 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 TIPRLO75663 272 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CER1O95813 267 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CYP21A2P08686 494 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SPATA31D3P0C874 917 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CPA1P15085 419 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 GCSHP23434 173 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 RPS6KB1P23443 525 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 MGAT1P26572 445 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 ABCD3P28288 659 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 KCNC1P48547 511 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 POLD2P49005 469 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 MAN2A2P49641 1150 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CCT4P50991 539 aaKnown RBP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CCR9P51686 369 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 PGDP52209 483 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CLNS1AP54105 237 aaKnown RBP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SETQ01105 290 aaPredicted RBP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SF3A3Q12874 501 aaKnown RBP eCLIP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 ERV3-1Q14264 604 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 CCNG2Q16589 344 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 MEA1Q16626 185 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 P3H1Q32P28 736 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 ARHGAP40Q5TG30 622 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 RGS7BPQ6MZT1 257 aaPredicted RBP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 PDXDC1Q6P996 788 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SYNE3Q6ZMZ3 975 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SPATA31D4Q6ZUB0 917 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 TTC30AQ86WT1 665 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SYT12Q8IV01 421 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 SLC15A3Q8IY34 581 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 ELOA2Q8IYF1 753 aaPredicted RBP3.53□□□□□ -1.84
TRAV28-201ENST00000557548 MB21D1Q8N884 522 aa3.53□□□□□ -1.84
TRAV28-201ENST00000557548 FBXO15Q8NCQ5 510 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms