RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ZDHHC11BP0C7U3 371 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 PNMA6AP0CW24 399 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 PSMC3P17980 439 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 HDCP19113 662 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 BPIFB4P59827 614 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 POLR2FP61218 127 aaKnown RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 SIGLEC14Q08ET2 396 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 GRM2Q14416 872 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 ZNF268Q14587 947 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 MEA1Q16626 185 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 PKDCCQ504Y2 493 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 RAB41Q5JT25 222 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 VITQ6UXI7 678 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 CCDC186Q7Z3E2 898 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 MFSD6LQ8IWD5 586 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 FAM71AQ8IYT1 594 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 CELF5Q8N6W0 485 aaKnown RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 ARL14EPQ8N8R7 260 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 NEK11Q8NG66 645 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 ZNF606Q8WXB4 792 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 USP13Q92995 863 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 SECISBP2LQ93073 1101 aaKnown RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 RSPRY1Q96DX4 576 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 SLC22A12Q96S37 553 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 TRMT61BQ9BVS5 477 aaKnown RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 STK33Q9BYT3 514 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 KIF9Q9HAQ2 790 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 LRRC4Q9HBW1 653 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 ACP6Q9NPH0 428 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 TLR8Q9NR97 1041 aaKnown RBP14.32□□□□□ -0.12
SHMT2-228ENST00000557302 TDP1Q9NUW8 608 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 USP3Q9Y6I4 520 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 MYH10P35580 1976 aa14.32□□□□□ -0.12
SHMT2-228ENST00000557302 A0A1B0GTH6 734 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 F8VZ95 297 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 EPHB6O15197 1021 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 TEX33O43247 280 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 OAS1P00973 400 aaKnown RBP14.31□□□□□ -0.12
SHMT2-228ENST00000557302 CLCN1P35523 988 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 TUBP50607 506 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 TKTL1P51854 596 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 GPC5P78333 572 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 HECTD3Q5T447 861 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 SNX30Q5VWJ9 437 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 TRIM67Q6ZTA4 783 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 YAF2Q8IY57 180 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 SIX6OS1Q8N1H7 587 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 SLC35F5Q8WV83 523 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 KCTD13Q8WZ19 329 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 SPAG5Q96R06 1193 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 CYP2S1Q96SQ9 504 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 C1QTNF1Q9BXJ1 281 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 BRD9Q9H8M2 597 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 SLC2A4RGQ9NR83 387 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 FBXL21Q9UKT6 434 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 CCL26Q9Y258 94 aa14.31□□□□□ -0.12
SHMT2-228ENST00000557302 PATJQ8NI35 1801 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 A0A1W2PQH9 124 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 CFHP08603 1231 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 GDI1P31150 447 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 PSEN1P49768 467 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 RGS7P49802 495 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 SLC7A9P82251 487 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 FANCCQ00597 558 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 PFKPQ01813 784 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 FCHO2Q0JRZ9 810 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 ADIGQ0VDE8 80 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 DENND1BQ6P3S1 775 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 SLC47A2Q86VL8 602 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 ARHGAP18Q8N392 663 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 BPIFB1Q8TDL5 484 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 HSFY1Q96LI6 401 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 NAP1L5Q96NT1 182 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-228ENST00000557302 ULBP1Q9BZM6 244 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 NACA2Q9H009 215 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 CCSER2Q9H7U1 834 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 NLRC4Q9NPP4 1024 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 THG1LQ9NWX6 298 aaKnown RBP14.3□□□□□ -0.12
SHMT2-228ENST00000557302 NAGPAQ9UK23 515 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 ARHGAP26Q9UNA1 814 aa14.3□□□□□ -0.12
SHMT2-228ENST00000557302 ZNF638Q14966 1978 aaKnown RBP14.29□□□□□ -0.12
SHMT2-228ENST00000557302 TMEM221A6NGB7 291 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 M0R296 226 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 ZNF263O14978 683 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 COCHO43405 550 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 TLR5O60602 858 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 OLFM2O95897 454 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 ZBED1O96006 694 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 MBL2P11226 248 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-228ENST00000557302 LCP1P13796 627 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 COL9A1P20849 921 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 KRT9P35527 623 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 GPD2P43304 727 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 PGFP49763 221 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 JAM2P57087 298 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 ZNF445P59923 1031 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 PMF1Q6P1K2 205 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 TTC16Q8NEE8 873 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 IRF7Q92985 503 aa14.29□□□□□ -0.12
SHMT2-228ENST00000557302 LRRC3BQ96PB8 259 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms