RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	MED1	Q15648	1581 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBC1D4	O60343	1298 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	H2AFY	O75367	372 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	MICAL2	O94851	1124 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ESRRB	O95718	433 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	BLMH	Q13867	455 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	STXBP2	Q15833	593 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCSK7	Q16549	785 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PDK4	Q16654	411 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SHROOM1	Q2M3G4	852 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ARL13B	Q3SXY8	428 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZDHHC24	Q6UX98	284 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	GMCL1P1	Q8NEA9	526 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SGF29	Q96ES7	293 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	MASTL	Q96GX5	879 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PHACTR1	Q9C0D0	580 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC19	Q9H756	370 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	DDX4	Q9NQI0	724 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	MRPL42	Q9Y6G3	142 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	TIAM2	Q8IVF5	1701 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	CNTNAP2	Q9UHC6	1331 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	NWD2	Q9ULI1	1742 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005		H0YGN5	161 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	TMCC1	O94876	653 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PROC	P04070	461 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLURP2	P0DP57	97 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	TMED10	P49755	219 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ROR2	Q01974	943 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	DUOXA2	Q1HG44	320 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	WDR72	Q3MJ13	1102 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	EFHC2	Q5JST6	749 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM182A	Q5T1J6	154 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PRR5L	Q6MZQ0	368 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	OTOP1	Q7RTM1	612 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC26A11	Q86WA9	606 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SP8	Q8IXZ3	490 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	KATNAL2	Q8IYT4	538 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC71	Q8N4P6	559 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNF149	Q8NC42	400 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM162A	Q96A26	154 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	MBOAT7	Q96N66	472 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZMAT2	Q96NC0	199 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	EBF3	Q9H4W6	596 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PLEKHA5	Q9HAU0	1116 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SARS2	Q9NP81	518 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	DAPK2	Q9UIK4	370 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	R3HDM2	Q9Y2K5	976 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	NFS1	Q9Y697	457 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	FRMPD4	Q14CM0	1322 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SUPT3H	B4E1H0	165 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005		F8VP50	259 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	NR5A2	O00482	541 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPAG6	O75602	509 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	DLGAP3	O95886	979 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ITGB3	P05106	788 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PAEP	P09466	180 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PDGFRB	P09619	1106 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ETFB	P38117	255 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	AP3M2	P53677	418 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	C16orf72	Q14CZ0	275 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	C6orf52	Q5T4I8	152 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	MARK2	Q7KZI7	788 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	POLN	Q7Z5Q5	900 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	CDR2L	Q86X02	465 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PALB2	Q86YC2	1186 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZFPM1	Q8IX07	1006 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	GIPC2	Q8TF65	315 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	NAT14	Q8WUY8	206 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	IFT43	Q96FT9	208 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPATA33	Q96N06	139 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	CGRRF1	Q99675	332 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	BEGAIN	Q9BUH8	593 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNPEP	Q9H4A4	650 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF408	Q9H9D4	720 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCDH9	Q9HC56	1237 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SIX2	Q9NPC8	291 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZDHHC18	Q9NUE0	388 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ATF5	Q9Y2D1	282 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	CDY2A	Q9Y6F7	541 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	CDY1	Q9Y6F8	540 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPDYE16	A6NNV3	312 aa	Predicted RBP	5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	MYO1G	B0I1T2	1018 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPATA31C1	P0DKV0	1188 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	RALB	P11234	206 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	GZMA	P12544	262 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	MGAT1	P26572	445 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	NUMB	P49757	651 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	TPI1	P60174	286 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	CRADD	P78560	199 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	ACVR2B	Q13705	512 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	DPYSL3	Q14195	570 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	CAPRIN1	Q14444	709 aa	Known RBP	5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	NPY5R	Q15761	445 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	ASTE1	Q2TB18	679 aa	Predicted RBP	5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPDYE2	Q495Y8	402 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	KHDC1	Q4VXA5	237 aa	Known RBP	5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC45A4	Q5BKX6	768 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	UBAP2	Q5T6F2	1119 aa	Known RBP	5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	PLEKHA7	Q6IQ23	1121 aa		5.15	□□□□□ -1.58
SYNE2-223	ENST00000557005	CLEC4F	Q8N1N0	589 aa		5.15	□□□□□ -1.58

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