RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TNFRSF8P28908 595 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 MAP2K6P52564 334 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 UCP3P55916 312 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 SOX8P57073 446 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 SUMO2P61956 95 aaKnown RBP4.19□□□□□ -1.74
SCFD1-218ENST00000556256 SATB1Q01826 763 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 STIM1Q13586 685 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 PLS1Q14651 629 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 ASIC2Q16515 512 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 ZNF750Q32MQ0 723 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 DCDC5Q6ZRR9 648 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 PTCHD4Q6ZW05 846 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 NECAB2Q7Z6G3 386 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 LINC01465Q8N7H1 131 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 WIPF2Q8TF74 440 aaPredicted RBP4.19□□□□□ -1.74
SCFD1-218ENST00000556256 DNASE2BQ8WZ79 361 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 SLC25A28Q96A46 364 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 LMLNQ96KR4 655 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 MESP1Q9BRJ9 268 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 TMEM204Q9BSN7 226 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 TMEM8AQ9HCN3 771 aa4.19□□□□□ -1.74
SCFD1-218ENST00000556256 GAR1Q9NY12 217 aaKnown RBP4.19□□□□□ -1.74
SCFD1-218ENST00000556256 FER1L4A9Z1Z3 1794 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 SHTN1A0MZ66 631 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 PSMD9O00233 223 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 CYP2C9P11712 490 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 CPA2P48052 419 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 DIO1P49895 249 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 KRT17Q04695 432 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 MLC1Q15049 377 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 MANEAQ5SRI9 462 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 PNMA8AQ86V59 439 aaPredicted RBP4.18□□□□□ -1.74
SCFD1-218ENST00000556256 MIER2Q8N344 545 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 PRR18Q8N4B5 295 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 MAFAQ8NHW3 353 aaPredicted RBP4.18□□□□□ -1.74
SCFD1-218ENST00000556256 BRIX1Q8TDN6 353 aaKnown RBP4.18□□□□□ -1.74
SCFD1-218ENST00000556256 TMEM171Q8WVE6 324 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 ASB5Q8WWX0 329 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 NLRP4Q96MN2 994 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 MEIS3Q99687 375 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 TRHDEQ9UKU6 1024 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 PCDHA6Q9UN73 950 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 TMX2Q9Y320 296 aa4.18□□□□□ -1.74
SCFD1-218ENST00000556256 TTBK1Q5TCY1 1321 aaPredicted RBP4.18□□□□□ -1.74
SCFD1-218ENST00000556256 KRTAP9-6A8MVA2 160 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 H3BUI4 141 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 GABRDO14764 452 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 ZRANB2O95218 330 aaKnown RBP eCLIP4.17□□□□□ -1.74
SCFD1-218ENST00000556256 NKX6-1P78426 367 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-218ENST00000556256 HSF1Q00613 529 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 INPP5JQ15735 1006 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-218ENST00000556256 C9orf50Q5SZB4 431 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 TMEM63BQ5T3F8 832 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 GFI1BQ5VTD9 330 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 DDX42Q86XP3 938 aaKnown RBP eCLIP4.17□□□□□ -1.74
SCFD1-218ENST00000556256 PPP2R3CQ969Q6 453 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 CTHRC1Q96CG8 243 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 TMX1Q9H3N1 280 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 GBA2Q9HCG7 927 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-218ENST00000556256 MCM8Q9UJA3 840 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 PRKAB1Q9Y478 270 aa4.17□□□□□ -1.74
SCFD1-218ENST00000556256 PRSS47A8MTI9 375 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 CLSTN1O94985 981 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 SLC11A2P49281 568 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 B4GALNT1Q00973 533 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 KCNB1Q14721 858 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 MGAT5BQ3V5L5 792 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 KHDC1LQ5JSQ8 128 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 CAPRIN2Q6IMN6 1127 aaKnown RBP4.16□□□□□ -1.74
SCFD1-218ENST00000556256 VSTM1Q6UX27 236 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 TMPRSS12Q86WS5 348 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 C16orf71Q8IYS4 520 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-218ENST00000556256 CELF5Q8N6W0 485 aaKnown RBP4.16□□□□□ -1.74
SCFD1-218ENST00000556256 HS6ST2Q96MM7 605 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 CCDC8Q9H0W5 538 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-218ENST00000556256 SELENONQ9NZV5 590 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 MAFFQ9ULX9 164 aa4.16□□□□□ -1.74
SCFD1-218ENST00000556256 DRG1Q9Y295 367 aaKnown RBP4.16□□□□□ -1.74
SCFD1-218ENST00000556256 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.16□□□□□ -1.74
SCFD1-218ENST00000556256 ANKRD62A6NC57 917 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 PRKAG1P54619 331 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 WNT3P56703 355 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 PTCHD3Q3KNS1 767 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 ZNF324BQ6AW86 544 aaPredicted RBP4.15□□□□□ -1.75
SCFD1-218ENST00000556256 USP45Q70EL2 814 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 CUZD1Q86UP6 607 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 RAB11FIP4Q86YS3 637 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 SLC35A4Q96G79 324 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 SNX15Q9NRS6 342 aa4.15□□□□□ -1.75
SCFD1-218ENST00000556256 M0R3H8 397 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 MYO1CO00159 1063 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 CLIC1O00299 241 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 IGKV3-20P01619 116 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 XRCC6P12956 609 aaKnown RBP eCLIP4.14□□□□□ -1.75
SCFD1-218ENST00000556256 CREB1P16220 341 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 CDC25AP30304 524 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 IL6STP40189 918 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-218ENST00000556256 SLC14A1Q13336 389 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 PRTGQ2VWP7 1150 aa4.14□□□□□ -1.75
SCFD1-218ENST00000556256 EARS2Q5JPH6 523 aaKnown RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms