RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ZFYVE19Q96K21 471 aa21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 SLC22A12Q96S37 553 aa21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 UBXN6Q9BZV1 441 aa21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 DUS2Q9NX74 493 aaKnown RBP21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 HESX1Q9UBX0 185 aa21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 SCML2Q9UQR0 700 aa21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 F5P12259 2224 aa21.8■■□□□ 1.08
CCDC88C-210ENST00000555995 SLC9A3R1O14745 358 aaPredicted RBP21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 BEST1O76090 585 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 ZDHHC11BP0C7U3 371 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 MBL2P11226 248 aaPredicted RBP21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 VDRP11473 427 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 CD72P21854 359 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 MTIF2P46199 727 aaKnown RBP21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 BCAT1P54687 386 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 NR1H3Q13133 447 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 ANGPT1Q15389 498 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 DPCR1Q3MIW9 517 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 ENOSF1Q7L5Y1 443 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 TADA2BQ86TJ2 420 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 ANKRD52Q8NB46 1076 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 EHBP1Q8NDI1 1231 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 NACA2Q9H009 215 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 GTSE1Q9NYZ3 720 aa21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 NDRG2Q9UN36 371 aaKnown RBP21.79■■□□□ 1.08
CCDC88C-210ENST00000555995 GTPBP10A4D1E9 387 aaKnown RBP21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 LEFTY2O00292 366 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 NFATC1O95644 943 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 CD19P15391 556 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 ACO1P21399 889 aaKnown RBP21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 DGKKQ5KSL6 1271 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 CREBRFQ8IUR6 639 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 C1orf210Q8IVY1 113 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 UBR7Q8N806 425 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 LMO3Q8TAP4 145 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 ATOH1Q92858 354 aaPredicted RBP21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 CDK5RAP1Q96SZ6 601 aaKnown RBP21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 INTS2Q9H0H0 1204 aaKnown RBP21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 GMIPQ9P107 970 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 CPQQ9Y646 472 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 COL4A3Q01955 1670 aa21.78■■□□□ 1.08
CCDC88C-210ENST00000555995 HHLA1C9JL84 531 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 KIF11P52732 1056 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 TNK2Q07912 1038 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 GOLGA8FQ08AF8 430 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 GOLGA8DPQ0D2H9 430 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 BST2Q10589 180 aaKnown RBP21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 TMEM270Q6UE05 265 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 GBP6Q6ZN66 633 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 CCDC186Q7Z3E2 898 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 ARHGAP18Q8N392 663 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 TTC16Q8NEE8 873 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 EBF3Q9H4W6 596 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 HPS4Q9NQG7 708 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 TBC1D14Q9P2M4 693 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 MTF2Q9Y483 593 aaPredicted RBP21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 PCDHB4Q9Y5E5 795 aa21.77■■□□□ 1.08
CCDC88C-210ENST00000555995 H0Y858 1186 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 LAMTOR5O43504 91 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 TLR5O60602 858 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 SETSIPP0DME0 302 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 PPP2R5DQ14738 602 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 MAN2A1Q16706 1144 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 RBM43Q6ZSC3 357 aaKnown RBP21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 SYNPOQ8N3V7 929 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 GPT2Q8TD30 523 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 OTUB2Q96DC9 234 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 RNF38Q9H0F5 515 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 CHRDQ9H2X0 955 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 SPATA6Q9NWH7 488 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 CHORDC1Q9UHD1 332 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 TSPAN16Q9UKR8 245 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 FBXO4Q9UKT5 387 aa21.76■■□□□ 1.07
CCDC88C-210ENST00000555995 CACNA1HO95180 2353 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 E2F8A0AVK6 867 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 SHISA7A6NL88 538 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 XPO1O14980 1071 aaKnown RBP21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 COCHO43405 550 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 MFAP3P55082 362 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 GOLGA7BQ2TAP0 167 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 KLHDC10Q6PID8 442 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 ZC3H14Q6PJT7 736 aaKnown RBP21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 GPRIN1Q7Z2K8 1008 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 ZNF276Q8N554 614 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 RIN3Q8TB24 985 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 MED15Q96RN5 788 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 ECT2Q9H8V3 914 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 CYLDQ9NQC7 956 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 CLIC5Q9NZA1 410 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 SH3BP1Q9Y3L3 701 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 USP3Q9Y6I4 520 aa21.75■■□□□ 1.07
CCDC88C-210ENST00000555995 CYP26A1O43174 497 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 RALAP11233 206 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 ATP5C1P36542 298 aaKnown RBP21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 SOX9P48436 509 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 EML3Q32P44 896 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 TRIM68Q6AZZ1 485 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 TRIM65Q6PJ69 517 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 SASS6Q6UVJ0 657 aa21.74■■□□□ 1.07
CCDC88C-210ENST00000555995 MAMSTRQ6ZN01 415 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms