RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CISHQ9NSE2 258 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 FAM49BQ9NUQ9 324 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 DUS2Q9NX74 493 aaKnown RBP16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 SCML2Q9UQR0 700 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 LEFTY2O00292 366 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 SLC9A3R1O14745 358 aaPredicted RBP16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 LILRB5O75023 590 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 BEST1O76090 585 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ARSAP15289 507 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 HOXA6P31267 233 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 IFNAR2P48551 515 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 MAP3K7CLP57077 242 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 PAK1Q13153 545 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ORC1Q13415 861 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 GAS6Q14393 721 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 HECTD3Q5T447 861 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ARHGAP17Q68EM7 881 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 TRIM68Q6AZZ1 485 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ASCL5Q7RTU5 278 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ZNF276Q8N554 614 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 NELFBQ8WX92 580 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ZFRQ96KR1 1074 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 UBXN6Q9BZV1 441 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 CYLDQ9NQC7 956 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 ZSCAN32Q9NX65 697 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 KIAA1468Q9P260 1216 aa16.97■□□□□ 0.31
CCDC88C-209ENST00000554872 RIF1Q5UIP0 2472 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 CFAP54Q96N23 3096 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 NFATC1O95644 943 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 CD58P19256 250 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 DRD1P21728 446 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 TBXAS1P24557 533 aaPredicted RBP16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 GJA4P35212 333 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 ANP32AP39687 249 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 FMO5P49326 533 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 RAD23BP54727 409 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 NRLP54845 237 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 YWHAEP62258 255 aaKnown RBP16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 CUL2Q13617 745 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 PON2Q15165 354 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 FBXO43Q4G163 708 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 KLHDC10Q6PID8 442 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 TRIM59Q8IWR1 403 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 UBR7Q8N806 425 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 SLC4A11Q8NBS3 891 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 OTUB2Q96DC9 234 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 TMEM176AQ96HP8 235 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 ARID3AQ99856 593 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 DUSP16Q9BY84 665 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 CPQQ9Y646 472 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 WNT6Q9Y6F9 365 aa16.96■□□□□ 0.31
CCDC88C-209ENST00000554872 ZNF292O60281 2723 aa16.96■□□□□ 0.3
CCDC88C-209ENST00000554872 FAM186AA6NE01 2351 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 GVINP1Q7Z2Y8 2422 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 E2F8A0AVK6 867 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 COCHO43405 550 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 LMNAP02545 664 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 ADORA2BP29275 332 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 CXCL12P48061 93 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 PSEN1P49768 467 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 KIF11P52732 1056 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 CSTF1Q05048 431 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 GRSF1Q12849 480 aaKnown RBP eCLIP16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 NR1H3Q13133 447 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 PPP1R26Q5T8A7 1209 aaPredicted RBP16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 SMYD5Q6GMV2 418 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 ISM2Q6H9L7 571 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 FSTL4Q6MZW2 842 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 CCDC186Q7Z3E2 898 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.95■□□□□ 0.34e-8■■■■■ 164
CCDC88C-209ENST00000554872 TLR8Q9NR97 1041 aaKnown RBP16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 GMIPQ9P107 970 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 CTNND2Q9UQB3 1225 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 USP3Q9Y6I4 520 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 R4GN57 208 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 WDR87Q6ZQQ6 2873 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 FRYLO94915 3013 aa16.95■□□□□ 0.3
CCDC88C-209ENST00000554872 CHURC1-FNTBB4DL54 471 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 FGFR1OPO95684 399 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 EIF2DP41214 584 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 CETN1Q12798 172 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 CCDC40Q4G0X9 1142 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 KLHL10Q6JEL2 608 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 GPRIN1Q7Z2K8 1008 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 TTC8Q8TAM2 541 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 LMO3Q8TAP4 145 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 TATDN2Q93075 761 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 P2RY13Q9BPV8 354 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 RBM12Q9NTZ6 932 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 TBC1D14Q9P2M4 693 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 KIAA1257Q9ULG3 409 aa16.94■□□□□ 0.3
CCDC88C-209ENST00000554872 OTOGLQ3ZCN5 2332 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 BIN1O00499 593 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 TLR5O60602 858 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 MBL2P11226 248 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 IFRD2Q12894 506 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 GAB4Q2WGN9 574 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 RAB41Q5JT25 222 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 Q6ZS52 159 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 ADGRG2Q8IZP9 1017 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms