RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 GNL1P36915 607 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-215ENST00000554656 MYL6P60660 151 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 NOP14P78316 857 aaKnown RBP11.25□□□□□ -0.61
SHMT2-215ENST00000554656 SLC7A9P82251 487 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 CUL4BQ13620 913 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 MAPRE1Q15691 268 aaKnown RBP11.25□□□□□ -0.61
SHMT2-215ENST00000554656 BMT2Q1RMZ1 405 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 FBXO43Q4G163 708 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 TCEAL6Q6IPX3 200 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 SYT13Q7L8C5 426 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 CAMKK1Q8N5S9 505 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 XXYLT1Q8NBI6 393 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 RNF214Q8ND24 703 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 USP33Q8TEY7 942 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 TCEAL3Q969E4 200 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 CCDC47Q96A33 483 aaKnown RBP11.25□□□□□ -0.61
SHMT2-215ENST00000554656 ZC3H10Q96K80 434 aaKnown RBP11.25□□□□□ -0.61
SHMT2-215ENST00000554656 C8orf48Q96LL4 319 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 CEP295NLQ96MC4 621 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 B3GNT5Q9BYG0 378 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 DUSP15Q9H1R2 295 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-215ENST00000554656 SMYD3Q9H7B4 428 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 SLC39A2Q9NP94 309 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 SMPD4Q9NXE4 827 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 TRPM5Q9NZQ8 1165 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 MAN1B1Q9UKM7 699 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 CPQQ9Y646 472 aa11.25□□□□□ -0.61
SHMT2-215ENST00000554656 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 GOLGA6L19H0YKK7 550 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 TRIM66O15016 1216 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 KLRC4O43908 158 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 APBB3O95704 486 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 STAU1O95793 577 aaKnown RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 PRR29P0C7W0 189 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 ERCC5P28715 1186 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 MPLP40238 635 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 PPP1R2P41236 205 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 AFMP43652 599 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 LIMK1P53667 647 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 SEC13P55735 322 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 AMPD2Q01433 879 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 CCDC173Q0VFZ6 552 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 TAF10Q12962 218 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 WDR72Q3MJ13 1102 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 AASDHQ4L235 1098 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 TDRD10Q5VZ19 366 aaKnown RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 C11orf57Q6ZUT1 292 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 PAQR9Q6ZVX9 377 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 FILIP1Q7Z7B0 1213 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 C12orf40Q86WS4 652 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 C12orf56Q8IXR9 622 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 B3GALNT2Q8NCR0 500 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 OR6B3Q8NGW1 331 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 ZFRQ96KR1 1074 aaKnown RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 FNBP1Q96RU3 617 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 SDCBP2Q9H190 292 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 SNX25Q9H3E2 840 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 EBF1Q9UH73 591 aa11.24□□□□□ -0.61
SHMT2-215ENST00000554656 R3HCC1Q9Y3T6 440 aaKnown RBP11.24□□□□□ -0.61
SHMT2-215ENST00000554656 CEP192Q8TEP8 1941 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 FRYQ5TBA9 3013 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 PVALEFA0A1B0GWK0 134 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 BECN2A8MW95 431 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 KRT37O76014 449 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 VNN1O95497 513 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 NFATC1O95644 943 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 PFKLP17858 780 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 ANXA13P27216 316 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 CDH8P55286 799 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 TNNC1P63316 161 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 TPM4P67936 248 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 PSMD2Q13200 908 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 DPCR1Q3MIW9 517 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 COBLL1Q53SF7 1204 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 SCARA5Q6ZMJ2 495 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 HS2ST1Q7LGA3 356 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 KIAA0895Q8NCT3 520 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 SCAMP5Q8TAC9 235 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 ERCC4Q92889 916 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-215ENST00000554656 WBP2Q969T9 261 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 ACDQ96AP0 544 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 PDLIM2Q96JY6 352 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 PPP1R9BQ96SB3 815 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 TPSD1Q9BZJ3 242 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 ELOVL4Q9GZR5 314 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 VRTNQ9H8Y1 702 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 DMAC2Q9NW81 257 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 CFAP97Q9P2B7 532 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 NXF1Q9UBU9 619 aaKnown RBP11.23□□□□□ -0.61
SHMT2-215ENST00000554656 INVSQ9Y283 1065 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 PCDHGA5Q9Y5G8 931 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 CEP295Q9C0D2 2601 aa11.23□□□□□ -0.61
SHMT2-215ENST00000554656 LRRIQ3A6PVS8 624 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-215ENST00000554656 A8MXQ7 604 aa11.22□□□□□ -0.61
SHMT2-215ENST00000554656 BIN1O00499 593 aa11.22□□□□□ -0.61
SHMT2-215ENST00000554656 TNFRSF10BO14763 440 aa11.22□□□□□ -0.61
SHMT2-215ENST00000554656 FOXD2O60548 495 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-215ENST00000554656 RHOBTB3O94955 611 aa11.22□□□□□ -0.61
SHMT2-215ENST00000554656 RPN1P04843 607 aaKnown RBP11.22□□□□□ -0.61
SHMT2-215ENST00000554656 FAM163BP0C2L3 166 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms