RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 TRMT2BQ96GJ1 504 aaKnown RBP13.19□□□□□ -0.3
SHMT2-214ENST00000554604 PCED1BQ96HM7 432 aa13.19□□□□□ -0.3
SHMT2-214ENST00000554604 SLC46A2Q9BY10 475 aa13.19□□□□□ -0.3
SHMT2-214ENST00000554604 THG1LQ9NWX6 298 aaKnown RBP13.19□□□□□ -0.3
SHMT2-214ENST00000554604 OBP2AQ9NY56 170 aa13.19□□□□□ -0.3
SHMT2-214ENST00000554604 DLGAP2Q9P1A6 1054 aa13.19□□□□□ -0.3
SHMT2-214ENST00000554604 NDRG2Q9UN36 371 aaKnown RBP13.19□□□□□ -0.3
SHMT2-214ENST00000554604 MTF2Q9Y483 593 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-214ENST00000554604 HELZP42694 1942 aaKnown RBP13.19□□□□□ -0.3
SHMT2-214ENST00000554604 USP34Q70CQ2 3546 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 EP300Q09472 2414 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 MAPK13O15264 365 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 NOL4O94818 638 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 GLULP15104 373 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 TARSP26639 723 aaKnown RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 WEE1P30291 646 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 HNRNPH3P31942 346 aaKnown RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 PIK3CAP42336 1068 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 MAGEA9P43362 315 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 VAMP7P51809 220 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 ADAM9Q13443 819 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 ZACNQ401N2 412 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 INTS8Q75QN2 995 aaKnown RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 SV2AQ7L0J3 742 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 FRMD5Q7Z6J6 570 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 TMEM150AQ86TG1 271 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 FAM186BQ8IYM0 893 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 B3GALNT2Q8NCR0 500 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 BPIFB1Q8TDL5 484 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 EEF2KMTQ96G04 330 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 MYRFLQ96LU7 910 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 PCMTD1Q96MG8 357 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 DESI2Q9BSY9 194 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 IMPG2Q9BZV3 1241 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 SMG9Q9H0W8 520 aaKnown RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 SMYD3Q9H7B4 428 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 VRTNQ9H8Y1 702 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 L2HGDHQ9H9P8 463 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 TRPC7Q9HCX4 862 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 SPATA6Q9NWH7 488 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 ZNHIT6Q9NWK9 470 aaKnown RBP13.18□□□□□ -0.3
SHMT2-214ENST00000554604 EHD2Q9NZN4 543 aa13.18□□□□□ -0.3
SHMT2-214ENST00000554604 ATP8B3O60423 1300 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 SOBPA7XYQ1 873 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 TRIM66O15016 1216 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 SLC16A3O15427 465 aaKnown RBP13.17□□□□□ -0.3
SHMT2-214ENST00000554604 LAMTOR5O43504 91 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 GFRA3O60609 400 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 AKAP3O75969 853 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 VNN1O95497 513 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 PSMC2P35998 433 aaKnown RBP13.17□□□□□ -0.3
SHMT2-214ENST00000554604 NBL1P41271 181 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 RAP1GAPP47736 663 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 CDH8P55286 799 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 C1orf228Q6PIY5 440 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 DENND5BQ6ZUT9 1274 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 MON1AQ86VX9 555 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 TTC16Q8NEE8 873 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 FAM3CQ92520 227 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 TAF4BQ92750 862 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 ZFYVE19Q96K21 471 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 TNIP3Q96KP6 325 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 SPATA17Q96L03 361 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 CEP295NLQ96MC4 621 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 LRRC3BQ96PB8 259 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 ELOVL4Q9GZR5 314 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 DPEP3Q9H4B8 488 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 C8orf33Q9H7E9 229 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-214ENST00000554604 KIF9Q9HAQ2 790 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 METTL14Q9HCE5 456 aaKnown RBP13.17□□□□□ -0.3
SHMT2-214ENST00000554604 TDP1Q9NUW8 608 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 EPN1Q9Y6I3 576 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-214ENST00000554604 MYO15AQ9UKN7 3530 aa13.17□□□□□ -0.3
SHMT2-214ENST00000554604 TRAV19A0A0A6YYK7 116 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 F8VP50 259 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 ARNTLO00327 626 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 NDUFA10O95299 355 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 HLA-DRAP01903 254 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CKMP06732 381 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 TRIM49P0CI25 452 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 TRIM49CP0CI26 452 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CYLC1P35663 651 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 RPS9P46781 194 aaKnown RBP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 GCLMP48507 274 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 KLK7P49862 253 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 MLLT6P55198 1093 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CC2D1AQ6P1N0 951 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 WDR59Q6PJI9 974 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 ZNF662Q6ZS27 426 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CCDC170Q8IYT3 715 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 TTC8Q8TAM2 541 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 USP13Q92995 863 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 NKD2Q969F2 451 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CLDN23Q96B33 292 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 MSANTD3Q96H12 275 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 CHP1Q99653 195 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 MED10Q9BTT4 135 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 MMRN2Q9H8L6 949 aa13.16□□□□□ -0.3
SHMT2-214ENST00000554604 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.31e-9■■■■■ 76.9
SHMT2-214ENST00000554604 GTSE1Q9NYZ3 720 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 159.5 ms