RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ARHGAP26Q9UNA1 814 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 CPQQ9Y646 472 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 ZFHX2Q9C0A1 2572 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 SOBPA7XYQ1 873 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 SPECC1L-ADORA2AF8WAN1 911 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 MDM4O15151 490 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 P4HA2O15460 535 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 GABBR2O75899 941 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 OLFM2O95897 454 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ZDHHC11BP0C7U3 371 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 TBXAS1P24557 533 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 BRD2P25440 801 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ERCC5P28715 1186 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 CTHP32929 405 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 KIF11P52732 1056 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 PDE4CQ08493 712 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ZNF268Q14587 947 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 MTF1Q14872 753 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 TPD52L1Q16890 204 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 RBM43Q6ZSC3 357 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 SCD5Q86SK9 330 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM3CQ92520 227 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ZFRQ96KR1 1074 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 UBE2TQ9NPD8 197 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ACP6Q9NPH0 428 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 THG1LQ9NWX6 298 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 EHD2Q9NZN4 543 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 CFAP97Q9P2B7 532 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ZMYM5Q9UJ78 669 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 AJAP1Q9UKB5 411 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 SCML2Q9UQR0 700 aa12.23□□□□□ -0.45
CCDC88C-208ENST00000554165 ATG2BQ96BY7 2078 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 MIA3Q5JRA6 1907 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 A0A1W2PQH9 124 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 GOLGA6L22H0YM25 854 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 O00370 1275 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 MBL2P11226 248 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 HOXC13P31276 330 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 PLA2G5P39877 138 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 PPP3CCP48454 512 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 SLC7A9P82251 487 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 PLCB2Q00722 1185 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 RUNX3Q13761 415 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 PON2Q15165 354 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 ITPRIPL2Q3MIP1 535 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 SGO2Q562F6 1265 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 MIIPQ5JXC2 388 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 HECTD3Q5T447 861 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 CC2D1AQ6P1N0 951 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 PIGZQ86VD9 579 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 MAML2Q8IZL2 1156 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 TTC39CQ8N584 583 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 ANKRD52Q8NB46 1076 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 RBBP8NLQ8NC74 664 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 CLDN23Q96B33 292 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 THAP9Q9H5L6 903 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 KIF9Q9HAQ2 790 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 FBRSL1Q9HCM7 1045 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 SIX2Q9NPC8 291 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 DUS2Q9NX74 493 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 TMEM63CQ9P1W3 806 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 TSPAN16Q9UKR8 245 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 ARIH1Q9Y4X5 557 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 PATJQ8NI35 1801 aa12.22□□□□□ -0.45
CCDC88C-208ENST00000554165 ANTXRLA6NF34 631 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 KCNJ18B7U540 433 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 PIK3R2O00459 728 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 MAN2B1O00754 1011 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 TLR5O60602 858 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 IRF1P10914 325 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 CHRNB1P11230 501 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 VDRP11473 427 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 TRIM21P19474 475 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 PON1P27169 355 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 ZNF132P52740 706 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 PTPN5P54829 565 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 YWHAEP62258 255 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 CETN1Q12798 172 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 GAS6Q14393 721 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 KCNJ12Q14500 433 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 ANGPT1Q15389 498 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 EML3Q32P44 896 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 SNX30Q5VWJ9 437 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 DPY19L2P1Q6NXN4 242 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 TRIM65Q6PJ69 517 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 GBP6Q6ZN66 633 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 Q6ZS52 159 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 PDZD8Q8NEN9 1154 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 OSCP1Q8WVF1 389 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 OVCA2Q8WZ82 227 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM122AQ96E09 287 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 KCNH6Q9H252 994 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 FBXO44Q9H4M3 255 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 LMAN1LQ9HAT1 526 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 C2orf42Q9NWW7 574 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 COMMD8Q9NX08 183 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 NFE2L3Q9Y4A8 694 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 MYOFQ9NZM1 2061 aa12.21□□□□□ -0.45
CCDC88C-208ENST00000554165 HELZP42694 1942 aaKnown RBP12.21□□□□□ -0.46
CCDC88C-208ENST00000554165 MYO16Q9Y6X6 1858 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms