RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MPZL3Q6UWV2 235 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 DEFB132Q7Z7B7 95 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ZBTB8OSQ8IWT0 167 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CMASQ8NFW8 434 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 STK32AQ8WU08 396 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 SEPT1Q8WYJ6 367 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ANKRD36BP1Q96IX9 119 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TSSK1BQ9BXA7 367 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 MAGEB5Q9BZ81 275 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CDT1Q9H211 546 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 LHX5Q9H2C1 402 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TEX264Q9Y6I9 313 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 LACTBL1A8MY62 500 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 WFS1O76024 890 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 RNF8O76064 485 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 TOP3BO95985 862 aaKnown RBP7.82□□□□□ -1.16
LIMA1-213ENST00000552720 C1QAP02745 245 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 PTPN4P29074 926 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 GPD2P43304 727 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 RGS7P49802 495 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 ERFP50548 548 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 SLC8A3P57103 927 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 SESN3P58005 492 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 IGBP1P78318 339 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 BMPR2Q13873 1038 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 ZC3H12AQ5D1E8 599 aaKnown RBP7.82□□□□□ -1.16
LIMA1-213ENST00000552720 FAM160B1Q5W0V3 765 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 JADE1Q6IE81 842 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 SH2D5Q6ZV89 423 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 CTAGE3PQ8IX95 158 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 PPM1NQ8N819 430 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 C12orf29Q8N999 325 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 TTC13Q8NBP0 860 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 FNIP1Q8TF40 1166 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 FAF2Q96CS3 445 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 FAXDC2Q96IV6 333 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 CYTH2Q99418 400 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 ADPGKQ9BRR6 497 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 TMEM120AQ9BXJ8 343 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 BCO2Q9BYV7 579 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 PLAC1Q9HBJ0 212 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 SSU72Q9NP77 194 aaKnown RBP7.82□□□□□ -1.16
LIMA1-213ENST00000552720 SMYD2Q9NRG4 433 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 RAB6BQ9NRW1 208 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 ARMCX1Q9P291 453 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 EFR3BQ9Y2G0 817 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 HEY1Q9Y5J3 304 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 NR2E3Q9Y5X4 410 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 OTOFQ9HC10 1997 aa7.82□□□□□ -1.16
LIMA1-213ENST00000552720 CCDC195A0A1B0GUA6 201 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 FAM237BA0A1B0GVD1 139 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 H7C0C1 242 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 ACKR2O00590 384 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CYB561D2O14569 222 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TM9SF1O15321 606 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 KCNN4O15554 427 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 B4GALT4O60513 344 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TROVE2P10155 538 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 NEFHP12036 1026 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 ATP5OP48047 213 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CPA2P48052 419 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 PTDSS1P48651 473 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 NEK3P51956 506 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 ARFIP2P53365 341 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 YWHAZP63104 245 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF200P98182 395 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 ROR1Q01973 937 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 KCNJ11Q14654 390 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 PRKD1Q15139 912 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 NOMO1Q15155 1222 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CA9Q16790 459 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 DALRD3Q5D0E6 543 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 SCYL2Q6P3W7 929 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 METTL7BQ6UX53 244 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 LBX2Q6XYB7 198 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 RINLQ6ZS11 566 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TSHZ1Q6ZSZ6 1077 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 RFX8Q6ZV50 586 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 FAM183BPQ6ZVS7 135 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 ALYREFQ86V81 257 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 FBXO27Q8NI29 283 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 SLC44A1Q8WWI5 657 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 RXFP2Q8WXD0 754 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 MCRS1Q96EZ8 462 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 NAF1Q96HR8 494 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 APOPT1Q96IL0 206 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CPB2Q96IY4 423 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 HEXIM2Q96MH2 286 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 GPR20Q99678 358 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 MFRPQ9BY79 579 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TRIM55Q9BYV6 548 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 VPS11Q9H270 941 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CXCL16Q9H2A7 254 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 GGA3Q9NZ52 723 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 FETUBQ9UGM5 382 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TRIM49D1C9J1S8 452 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 F5H423 210 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 MED7O43513 233 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CILPO75339 1184 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms