RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MRPS5P82675 430 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 AP1B1Q10567 949 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 BIRC2Q13490 618 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PIGHQ14442 188 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 KRT72Q14CN4 511 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 EMC2Q15006 297 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 TAZQ16635 292 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 CWF19L1Q69YN2 538 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SCARA5Q6ZMJ2 495 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 BBS12Q6ZW61 710 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 NIPA2Q8N8Q9 360 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 RBM15BQ8NDT2 890 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MCPH1Q8NEM0 835 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 LRRN4Q8WUT4 740 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MCUR1Q96AQ8 359 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 APOPT1Q96IL0 206 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PANX3Q96QZ0 392 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 GMLQ99445 158 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MSTO1Q9BUK6 570 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MTMR12Q9C0I1 747 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SYNCQ9H7C4 482 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SMYD2Q9NRG4 433 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 CISHQ9NSE2 258 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PCSK1NQ9UHG2 260 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 PLA2G4CQ9UP65 541 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 AGTPBP1Q9UPW5 1226 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 MTO1Q9Y2Z2 717 aaKnown RBP5.66□□□□□ -1.5
LIMA1-212ENST00000552491 TEX264Q9Y6I9 313 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 SIP14410 1827 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 COL4A5P29400 1685 aa5.66□□□□□ -1.5
LIMA1-212ENST00000552491 A0A1B0GVG6 124 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 LRRIQ4A6NIV6 560 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 B2RBV5 119 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 H3BRJ5 948 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 FAM189A1O60320 539 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 USP1O94782 785 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 CALB1P05937 261 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 ENO1P06733 434 aaKnown RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 UBTFL6P0CB48 400 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 SKIP12755 728 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 KCNA3P22001 575 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 TBXAS1P24557 533 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 PGM1P36871 562 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 RAP1GDS1P52306 607 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 CACNA2D1P54289 1103 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 ACTR2P61160 394 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 SP2Q02086 613 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 BST1Q10588 318 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 ORC1Q13415 861 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 DPYSL3Q14195 570 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 ABHD15Q6UXT9 468 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 PDIK1LQ8N165 341 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 RSAD2Q8WXG1 361 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 ATP6V0A1Q93050 837 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 FAM161BQ96MY7 647 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 PEBP4Q96S96 227 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 SRPK1Q96SB4 655 aaKnown RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 CYTH2Q99418 400 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 PPP1R12CQ9BZL4 782 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 IMPG2Q9BZV3 1241 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 ZCWPW1Q9H0M4 648 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 VCXQ9H320 206 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 MMADHCQ9H3L0 296 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 DDX56Q9NY93 547 aaKnown RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 MAP3K20Q9NYL2 800 aaKnown RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 WDR35Q9P2L0 1181 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 MARCOQ9UEW3 520 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 TTLL3Q9Y4R7 772 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 PCDHGA10Q9Y5H3 936 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 COL11A1P12107 1806 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-212ENST00000552491 PSME4Q14997 1843 aa5.65□□□□□ -1.5
LIMA1-212ENST00000552491 CCDC195A0A1B0GUA6 201 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 TRIM49D1C9J1S8 452 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 K7ERI5 159 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 WDR46O15213 610 aaKnown RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 SNUPNO95149 360 aaKnown RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 PIGRP01833 764 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ASNSP08243 561 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 KITP10721 976 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 RBP3P10745 1247 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 TSHRP16473 764 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 CDH5P33151 784 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ABCD1P33897 745 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 EIF3EP60228 445 aaKnown RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 TGFB2P61812 414 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 SARNPP82979 210 aaKnown RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ZNF200P98182 395 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 KDSRQ06136 332 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 FSTL1Q12841 308 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 MTMR2Q13614 643 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 BMPR2Q13873 1038 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 KCNJ11Q14654 390 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ZRSR2Q15696 482 aaKnown RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 SH3PXD2AQ5TCZ1 1133 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 FAXCQ5TGI0 409 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 RSBN1LQ6PCB5 846 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 RNF111Q6ZNA4 994 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 ARID3BQ8IVW6 561 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-212ENST00000552491 GALNT15Q8N3T1 639 aa5.65□□□□□ -1.51
LIMA1-212ENST00000552491 SLC25A41Q8N5S1 370 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms