RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZMYND10O75800 440 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 RRM1P23921 792 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 ELF1P32519 619 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 PSEN1P49768 467 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 SLC5A3P53794 718 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 EPHA5P54756 1037 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 KIF5AQ12840 1032 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 EIF4EBP2Q13542 120 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-211ENST00000552338 DDR2Q16832 855 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 MGAT5BQ3V5L5 792 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 EFHC1Q5JVL4 640 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 LIN9Q5TKA1 542 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 MMS22LQ6ZRQ5 1243 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 GPRIN1Q7Z2K8 1008 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 SLFN11Q7Z7L1 901 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 MON1AQ86VX9 555 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 ZSCAN30Q86W11 494 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 GPIHBP1Q8IV16 184 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 NIPA2Q8N8Q9 360 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 FEZF2Q8TBJ5 459 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 PPP2R3CQ969Q6 453 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 PGAP3Q96FM1 320 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-211ENST00000552338 PGLYRP2Q96PD5 576 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 C11orf70Q9BRQ4 267 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 TRIM62Q9BVG3 475 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 LRRC3Q9BY71 257 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 NSUN3Q9H649 340 aaKnown RBP10.07□□□□□ -0.8
LIMA1-211ENST00000552338 LRRC4Q9HBW1 653 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 SEPT11Q9NVA2 429 aaKnown RBP10.07□□□□□ -0.8
LIMA1-211ENST00000552338 RRN3Q9NYV6 651 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 MYO1AQ9UBC5 1043 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 TJP2Q9UDY2 1190 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 CNOT8Q9UFF9 292 aaKnown RBP10.07□□□□□ -0.8
LIMA1-211ENST00000552338 SALL4Q9UJQ4 1053 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 MTUS1Q9ULD2 1270 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 YIPF1Q9Y548 306 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 PCDHGC5Q9Y5F6 944 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 LAMA3Q16787 3333 aa10.07□□□□□ -0.8
LIMA1-211ENST00000552338 C2orf16Q68DN1 1984 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 SLC38A8A6NNN8 435 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 DPYSL4O14531 572 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 NCK2O43639 380 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ENDOD1O94919 500 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ZBED1O96006 694 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 TUBB4AP04350 444 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 PFKLP17858 780 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 SSTR3P32745 418 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ALDH1A3P47895 512 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 TKTL1P51854 596 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ARPP19P56211 112 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 CTC1Q2NKJ3 1217 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 KLHDC10Q6PID8 442 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ADGRD2Q7Z7M1 963 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ITIH5Q86UX2 942 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 SCUBE3Q8IX30 993 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ARHGAP18Q8N392 663 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 EFHBQ8N7U6 833 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 LEMD2Q8NC56 503 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 SLC35G2Q8TBE7 412 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 MICAL1Q8TDZ2 1067 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 GDPD5Q8WTR4 605 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 CENPIQ92674 756 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF653Q96CK0 615 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 ARHGEF26Q96DR7 871 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 SLC2A13Q96QE2 648 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 NCAPGQ9BPX3 1015 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 DESI2Q9BSY9 194 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 DDX23Q9BUQ8 820 aaKnown RBP10.06□□□□□ -0.8
LIMA1-211ENST00000552338 CYP4F11Q9HBI6 524 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 CLIC5Q9NZA1 410 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 UXTQ9UBK9 157 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-211ENST00000552338 SLC27A5Q9Y2P5 690 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 HCFC2Q9Y5Z7 792 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 PRRC2BQ5JSZ5 2229 aaKnown RBP10.06□□□□□ -0.8
LIMA1-211ENST00000552338 TRIOBPQ9H2D6 2365 aa10.06□□□□□ -0.8
LIMA1-211ENST00000552338 C2CD4BA6NLJ0 364 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 TMCO5BA8MYB1 307 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 HSF2BPO75031 334 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ABL1P00519 1130 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 F11P03951 625 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 FYNP06241 537 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 C8AP07357 584 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 KRT3P12035 628 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ABCB4P21439 1286 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 YWHAQP27348 245 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 PTPN9P43378 593 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 GPR15P49685 360 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 RGS7P49802 495 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 TUBP50607 506 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 EPHB3P54753 998 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 YWHAZP63104 245 aaKnown RBP10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ADIGQ0VDE8 80 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ADAM15Q13444 863 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 IFI16Q16666 785 aaKnown RBP10.05□□□□□ -0.8
LIMA1-211ENST00000552338 PABPC1LQ4VXU2 614 aaKnown RBP10.05□□□□□ -0.8
LIMA1-211ENST00000552338 MSANTD2Q6P1R3 559 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ELMSAN1Q6PJG2 1045 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 FAM183BPQ6ZVS7 135 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 DNAJB7Q7Z6W7 309 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-211ENST00000552338 SCD5Q86SK9 330 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms