RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CDK5RAP1Q96SZ6 601 aaKnown RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 SMOQ99835 787 aa12.49□□□□□ -0.41
HDAC4-216ENST00000544989 SRRTQ9BXP5 876 aaKnown RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 DUSP16Q9BY84 665 aa12.49□□□□□ -0.41
HDAC4-216ENST00000544989 UBXN6Q9BZV1 441 aa12.49□□□□□ -0.41
HDAC4-216ENST00000544989 SMG9Q9H0W8 520 aaKnown RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.49□□□□□ -0.412e-6■■■■■ 177.7
HDAC4-216ENST00000544989 TLR8Q9NR97 1041 aaKnown RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 TMEM30AQ9NV96 361 aa12.49□□□□□ -0.41
HDAC4-216ENST00000544989 SPATA6Q9NWH7 488 aaPredicted RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 DUS2Q9NX74 493 aaKnown RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 NDRG2Q9UN36 371 aaKnown RBP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 CCL26Q9Y258 94 aa12.49□□□□□ -0.41
HDAC4-216ENST00000544989 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.49□□□□□ -0.41
HDAC4-216ENST00000544989 CEP250Q9BV73 2442 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 NFATC1O95644 943 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 AFPP02771 609 aaKnown RBP12.48□□□□□ -0.41
HDAC4-216ENST00000544989 ZDHHC11BP0C7U3 371 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 PSEN1P49768 467 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 GOLGA8FQ08AF8 430 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 GOLGA8DPQ0D2H9 430 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 IFRD2Q12894 506 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-216ENST00000544989 ORC1Q13415 861 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 STILQ15468 1287 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 ARHGAP17Q68EM7 881 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 CLEC20AQ6ZU45 233 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 GPIHBP1Q8IV16 184 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 FAM114A1Q8IWE2 563 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 TRIM59Q8IWR1 403 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 TATDN2Q93075 761 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 OTUB2Q96DC9 234 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 ZFYVE19Q96K21 471 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 TWNKQ96RR1 684 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 CYP2S1Q96SQ9 504 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 FAM126AQ9BYI3 521 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-216ENST00000544989 NUP62CLQ9H1M0 184 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 CHRDQ9H2X0 955 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 GTSE1Q9NYZ3 720 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 TBC1D14Q9P2M4 693 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 SCML2Q9UQR0 700 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 MTF2Q9Y483 593 aaPredicted RBP12.48□□□□□ -0.41
HDAC4-216ENST00000544989 OBSL1O75147 1896 aa12.48□□□□□ -0.41
HDAC4-216ENST00000544989 TICRRQ7Z2Z1 1910 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 PAEPP09466 180 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 MBL2P11226 248 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-216ENST00000544989 CCR3P51677 355 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 RAD23BP54727 409 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 NRLP54845 237 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 STX17P56962 302 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 GCNT1Q02742 428 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 KCNH2Q12809 1159 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 GRSF1Q12849 480 aaKnown RBP eCLIP12.47□□□□□ -0.41
HDAC4-216ENST00000544989 TPD52L1Q16890 204 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ZNF394Q53GI3 561 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 SGO2Q562F6 1265 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 PPP1R26Q5T8A7 1209 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ZNF687Q8N1G0 1237 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ARHGAP18Q8N392 663 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ANKRD52Q8NB46 1076 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 SLC4A11Q8NBS3 891 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ZMIZ2Q8NF64 920 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 SCAMP5Q8TAC9 235 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 JAKMIP2Q96AA8 810 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 SLC22A12Q96S37 553 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 NACA2Q9H009 215 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 EBF3Q9H4W6 596 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 LMAN1LQ9HAT1 526 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 HESX1Q9UBX0 185 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 CPQQ9Y646 472 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 CHD6Q8TD26 2715 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ACACBO00763 2458 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 ANAPC1Q9H1A4 1944 aa12.47□□□□□ -0.41
HDAC4-216ENST00000544989 COL4A2P08572 1712 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 E2F8A0AVK6 867 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 SHISA7A6NL88 538 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 LEFTY2O00292 366 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 TRDMT1O14717 391 aaKnown RBP12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ATG13O75143 517 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 CHRNB1P11230 501 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 VDRP11473 427 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ACO1P21399 889 aaKnown RBP12.46□□□□□ -0.41
HDAC4-216ENST00000544989 DRD1P21728 446 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ERCC5P28715 1186 aaPredicted RBP12.46□□□□□ -0.41
HDAC4-216ENST00000544989 KIF11P52732 1056 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 BCAT1P54687 386 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 TNK2Q07912 1038 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 FZD5Q13467 585 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 EML3Q32P44 896 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 FBXO43Q4G163 708 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 KLHDC10Q6PID8 442 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ENOSF1Q7L5Y1 443 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 CCDC186Q7Z3E2 898 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 PPM1KQ8N3J5 372 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 SPEM1Q8N4L4 309 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ZNF276Q8N554 614 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 EHBP1Q8NDI1 1231 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 IPO9Q96P70 1041 aaKnown RBP12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ARID3AQ99856 593 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 THAP9Q9H5L6 903 aa12.46□□□□□ -0.41
HDAC4-216ENST00000544989 ECT2Q9H8V3 914 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms