RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ATXN1P54253 815 aaKnown RBP13.91□□□□□ -0.18
RTN3-213ENST00000543552 DMC1Q14565 340 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 ELF2Q15723 593 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 NFIL3Q16649 462 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 PREPLQ4J6C6 727 aaPredicted RBP13.91□□□□□ -0.18
RTN3-213ENST00000543552 SNX30Q5VWJ9 437 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 SV2AQ7L0J3 742 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 ACOT1Q86TX2 421 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 C12orf50Q8NA57 414 aaPredicted RBP13.91□□□□□ -0.18
RTN3-213ENST00000543552 HHIPQ96QV1 700 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 RNF38Q9H0F5 515 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 LINC00597Q9H2U6 94 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 TMEM30AQ9NV96 361 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 EBF1Q9UH73 591 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 NCOR2Q9Y618 2525 aa13.91□□□□□ -0.18
RTN3-213ENST00000543552 MED19A0JLT2 244 aaPredicted RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 SLC30A4O14863 429 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 EPN2O95208 641 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 FAM200BP0CF97 657 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 DLG4P78352 724 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 GOLGA8FQ08AF8 430 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 GOLGA8DPQ0D2H9 430 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 DHCR24Q15392 516 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 HSF5Q4G112 596 aaPredicted RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 NAIF1Q69YI7 327 aaPredicted RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 FAM186BQ8IYM0 893 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 FUKQ8N0W3 1084 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 CRYBG2Q8N1P7 616 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 GUF1Q8N442 669 aaKnown RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 TSTD1Q8NFU3 115 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 SLC2A14Q8TDB8 520 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 DDX1Q92499 740 aaKnown RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 KCNK16Q96T55 309 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 PNKPQ96T60 521 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 DUSP9Q99956 384 aaKnown RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 CYP3A43Q9HB55 503 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 TLR8Q9NR97 1041 aaKnown RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 SH3BP1Q9Y3L3 701 aa13.9□□□□□ -0.18
RTN3-213ENST00000543552 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.9□□□□□ -0.18
RTN3-213ENST00000543552 SPAG17Q6Q759 2223 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.89□□□□□ -0.19
RTN3-213ENST00000543552 FAM92AA1XBS5 289 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 TNFRSF10BO14763 440 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 COCHO43405 550 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 STX10O60499 249 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 ALDH1A2O94788 518 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 RHOBTB1O94844 696 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 APODP05090 189 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 ADH5P11766 374 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 PSMC2P35998 433 aaKnown RBP13.89□□□□□ -0.19
RTN3-213ENST00000543552 OPRD1P41143 372 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 ASPAP45381 313 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 DGKEP52429 567 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 NDST1P52848 882 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 MRPS21P82921 87 aaKnown RBP13.89□□□□□ -0.19
RTN3-213ENST00000543552 ZXDBP98169 803 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 INCA1Q0VD86 236 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 DPYDQ12882 1025 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 AASDHQ4L235 1098 aaPredicted RBP13.89□□□□□ -0.19
RTN3-213ENST00000543552 BTBD8Q5XKL5 378 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 KRBA2Q6ZNG9 492 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 NUDT18Q6ZVK8 323 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 KBTBD6Q86V97 674 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 ADGRG2Q8IZP9 1017 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 TTC39CQ8N584 583 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 SCAMP5Q8TAC9 235 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 USP33Q8TEY7 942 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 ZC3H10Q96K80 434 aaKnown RBP13.89□□□□□ -0.19
RTN3-213ENST00000543552 NT5C1AQ9BXI3 368 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 SDCBP2Q9H190 292 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 CSNK1G1Q9HCP0 422 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 IL37Q9NZH6 218 aa13.89□□□□□ -0.19
RTN3-213ENST00000543552 ZDHHC11BP0C7U3 371 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 CCDC130P13994 396 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 GTF2H1P32780 548 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 GRIA2P42262 883 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 SEC13P55735 322 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 GAD2Q05329 585 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 EDRF1Q3B7T1 1238 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 USP39Q53GS9 565 aaKnown RBP13.88□□□□□ -0.19
RTN3-213ENST00000543552 C2orf27AQ580R0 203 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 PAQR9Q6ZVX9 377 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 EZH1Q92800 747 aaPredicted RBP13.88□□□□□ -0.19
RTN3-213ENST00000543552 NIF3L1Q9GZT8 377 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 ARRDC1-AS1Q9H2J1 176 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 PNPLA8Q9NP80 782 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 ARHGEF4Q9NR80 690 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 FAM49BQ9NUQ9 324 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 RMND1Q9NWS8 449 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 GMIPQ9P107 970 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 CHORDC1Q9UHD1 332 aaPredicted RBP13.88□□□□□ -0.19
RTN3-213ENST00000543552 MMP17Q9ULZ9 603 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 RALGAPA1Q6GYQ0 2036 aa13.88□□□□□ -0.19
RTN3-213ENST00000543552 KIAA1549LQ6ZVL6 1849 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 K7EQS6 105 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 TLR5O60602 858 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 KAT7O95251 611 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 PRR29P0C7W0 189 aa13.87□□□□□ -0.19
RTN3-213ENST00000543552 ZNF806P0C7X5 589 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms