RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GZMA	P12544	262 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	HMGA1	P17096	107 aa	Known RBP	10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	CDC25C	P30307	473 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	CCDC173	Q0VFZ6	552 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	SPA17	Q15506	151 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	PTPN20	Q4JDL3	420 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	C2CD6	Q53TS8	623 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	ALKBH5	Q6P6C2	394 aa	Known RBP	10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	TMEM110	Q86TL2	294 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	LEMD2	Q8NC56	503 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	FEZF2	Q8TBJ5	459 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	MRPS31	Q92665	395 aa	Known RBP	10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	FAM149B1	Q96BN6	582 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	S1PR5	Q9H228	398 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	TRPC7	Q9HCX4	862 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	CYLD	Q9NQC7	956 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	CNGB3	Q9NQW8	809 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	SPTLC3	Q9NUV7	552 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	GMIP	Q9P107	970 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	TJP2	Q9UDY2	1190 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	NAGPA	Q9UK23	515 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	COG5	Q9UP83	839 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	SCML2	Q9UQR0	700 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	VWA8	A3KMH1	1905 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	NLRC5	Q86WI3	1866 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	PLXNA4	Q9HCM2	1894 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545		A0A1W2PQH9	124 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545		A0A1W2PRU2	124 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	SOWAHD	A6NJG2	315 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	PAPSS1	O43252	624 aa	Predicted RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	SART1	O43290	800 aa	Known RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	RTN2	O75298	545 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	RALA	P11233	206 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	GJA1	P17302	382 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	ABCB4	P21439	1286 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	MMP8	P22894	467 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	FSHR	P23945	695 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	MTHFR	P42898	656 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	PPP3CC	P48454	512 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	RNASE9	P60153	205 aa	Known RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	CENPC	Q03188	943 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	COL19A1	Q14993	1142 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	SLC18A3	Q16572	532 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	ARHGAP15	Q53QZ3	475 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	RAB41	Q5JT25	222 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	BTBD8	Q5XKL5	378 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	TOGARAM2	Q6ZUX3	1019 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	FAM183BP	Q6ZVS7	135 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	MON1A	Q86VX9	555 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	DNAAF5	Q86Y56	855 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	PHF13	Q86YI8	300 aa	Predicted RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	LRRC8A	Q8IWT6	810 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	CCDC170	Q8IYT3	715 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	MCOLN2	Q8IZK6	566 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	ARHGAP18	Q8N392	663 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	CCDC112	Q8NEF3	446 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	PDZD8	Q8NEN9	1154 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	CLEC4C	Q8WTT0	213 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	TCEAL4	Q96EI5	215 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	TRMT2B	Q96GJ1	504 aa	Known RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	MSLNL	Q96KJ4	702 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	MYRFL	Q96LU7	910 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	TTLL2	Q9BWV7	592 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	NACA2	Q9H009	215 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	SLITRK6	Q9H5Y7	841 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	TLR8	Q9NR97	1041 aa	Known RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	CDH22	Q9UJ99	828 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	STRIP2	Q9ULQ0	834 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	USP15	Q9Y4E8	981 aa	Predicted RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	EPN1	Q9Y6I3	576 aa	Predicted RBP	10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	USP3	Q9Y6I4	520 aa		10.67	□□□□□ -0.7
CPSF7-221	ENST00000543545	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF840P	A6NDX5	716 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	CAPN9	O14815	690 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	GRAP2	O75791	330 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	GABBR2	O75899	941 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	F11	P03951	625 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	H2AFZ	P0C0S5	128 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	MAGEA1	P43355	309 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	RPL34	P49207	117 aa	Known RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	DAOA	P59103	153 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	YWHAG	P61981	247 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	MRPS5	P82675	430 aa	Known RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	CYP4F8	P98187	520 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	SLC6A3	Q01959	620 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	C1QBP	Q07021	282 aa	Known RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF268	Q14587	947 aa	Predicted RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	TEAD2	Q15562	447 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	ASTE1	Q2TB18	679 aa	Predicted RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	EFHC1	Q5JVL4	640 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	FAM102A	Q5T9C2	384 aa	Predicted RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	BSPRY	Q5W0U4	402 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	PM20D1	Q6GTS8	502 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	DNAJC24	Q6P3W2	148 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	H2AFV	Q71UI9	128 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	GAREM2	Q75VX8	874 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	RSRC2	Q7L4I2	434 aa	Known RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	GET4	Q7L5D6	327 aa	Predicted RBP	10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	XYLT1	Q86Y38	959 aa		10.66	□□□□□ -0.7
CPSF7-221	ENST00000543545	TMC8	Q8IU68	726 aa		10.66	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms