RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 GNGT1P63211 74 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 ADIGQ0VDE8 80 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 SYCP2LQ5T4T6 812 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 C1orf228Q6PIY5 440 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 FAM149B1Q96BN6 582 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 C9orf72Q96LT7 481 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 MED10Q9BTT4 135 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 CAPS2Q9BXY5 557 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 RHOBTB2Q9BYZ6 727 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 ADAM7Q9H2U9 754 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 COX16Q9P0S2 106 aa15.2■□□□□ 0.02
CLIP1-216ENST00000541410 PTPN1P18031 435 aaKnown RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 HDAC4P56524 1084 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 HTRA3P83110 453 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 DSTYKQ6XUX3 929 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 PAQR9Q6ZVX9 377 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 SYDE1Q6ZW31 735 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 TRPV6Q9H1D0 765 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 FAM124BQ9H5Z6 455 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 CALCOCO1Q9P1Z2 691 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 SRRDQ9UH36 339 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 FOXO6A8MYZ6 492 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 HMGB1P1B2RPK0 211 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 PTPN7P35236 360 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 PCK1P35558 622 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 ACLYP53396 1101 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 MAP3K7CLP57077 242 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 PITX1P78337 314 aaPredicted RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 GAD2Q05329 585 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 DPYSL3Q14195 570 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 KRT81Q14533 505 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 SLMAPQ14BN4 828 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 LONRF1Q17RB8 773 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 FOXR1Q6PIV2 292 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 BBS12Q6ZW61 710 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 SLC35B2Q8TB61 432 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 RAET1EQ8TD07 263 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 HHIPL1Q96JK4 782 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 TNIP3Q96KP6 325 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 KCNK16Q96T55 309 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 SNRNP25Q9BV90 132 aaKnown RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 MAK16Q9BXY0 300 aaKnown RBP15.19■□□□□ 0.02
CLIP1-216ENST00000541410 CRTAC1Q9NQ79 661 aa15.19■□□□□ 0.02
CLIP1-216ENST00000541410 MYBPHLA2RUH7 354 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 BANF1O75531 89 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 SETSIPP0DME0 302 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 WARSP23381 471 aaKnown RBP15.18■□□□□ 0.02
CLIP1-216ENST00000541410 BRCC3P46736 316 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 CAPN12Q6ZSI9 719 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 LIMS2Q7Z4I7 341 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 UNC45BQ8IWX7 931 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 TOP6BLQ8N6T0 577 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 SPATA18Q8TC71 538 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 TMPRSS4Q9NRS4 437 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 TMEM30AQ9NV96 361 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 DDX20Q9UHI6 824 aaKnown RBP15.18■□□□□ 0.02
CLIP1-216ENST00000541410 THSD7BQ9C0I4 1608 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 B3GAT3O94766 335 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 YY1P25490 414 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 IRAK1P51617 712 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 CACNA2D1P54289 1103 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 IFI35P80217 286 aaPredicted RBP15.18■□□□□ 0.02
CLIP1-216ENST00000541410 ACAP1Q15027 740 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 CCDC38Q502W7 563 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 TIGD5Q53EQ6 642 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 LRRC31Q6UY01 552 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 FAM71DQ8N9W8 422 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 CHST12Q9NRB3 414 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 KRT82Q9NSB4 513 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 SLC38A7Q9NVC3 462 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 HEY1Q9Y5J3 304 aa15.18■□□□□ 0.02
CLIP1-216ENST00000541410 TTC3P53804 2025 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 NUDT17P0C025 328 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 EIF3EP60228 445 aaKnown RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 FASTKD3Q14CZ7 662 aaKnown RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 HIBCHQ6NVY1 386 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 CLEC20AQ6ZU45 233 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 HACE1Q8IYU2 909 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 PCSK9Q8NBP7 692 aaKnown RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 NETO2Q8NC67 525 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 NKD2Q969F2 451 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 TBCBQ99426 244 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 RSAD1Q9HA92 442 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 CREBZFQ9NS37 354 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 CTNNAL1Q9UBT7 734 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 ITGB1P05556 798 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 ITGAVP06756 1048 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 RBP3P10745 1247 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 IL4RP24394 825 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 ACTN2P35609 894 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 LMNB2Q03252 620 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 TAZQ16635 292 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 DRICH1Q6PGQ1 229 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 LEKR1Q6ZMV7 388 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 HFE2Q6ZVN8 426 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 RNF180Q86T96 592 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 PYROXD2Q8N2H3 581 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 CCDC185Q8N715 623 aa15.17■□□□□ 0.02
CLIP1-216ENST00000541410 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.17■□□□□ 0.02
CLIP1-216ENST00000541410 RSAD2Q8WXG1 361 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms