RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 IRGQQ8WZA9 623 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 ABI2Q9NYB9 513 aaPredicted RBP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CEP104O60308 925 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 GRAP2O75791 330 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 ZBED1O96006 694 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 GLUD2P49448 558 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 NDUFV1P49821 464 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 DAOAP59103 153 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 HADHQ16836 314 aaKnown RBP18.59■□□□□ 0.57
CLIP1-215ENST00000541108 DCAF12L1Q5VU92 463 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 PRSS55Q6UWB4 352 aaPredicted RBP18.59■□□□□ 0.57
CLIP1-215ENST00000541108 CPNE8Q86YQ8 564 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 USTQ9Y2C2 406 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 CDY1Q9Y6F8 540 aa18.59■□□□□ 0.57
CLIP1-215ENST00000541108 PDE2AO00408 941 aaPredicted RBP18.58■□□□□ 0.57
CLIP1-215ENST00000541108 TNFRSF10BO14763 440 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 CTIFO43310 598 aaKnown RBP18.58■□□□□ 0.57
CLIP1-215ENST00000541108 TLL1O43897 1013 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 LRCH4O75427 683 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 MATKP42679 507 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 CDR1P51861 262 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 TAS2R40P59535 323 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 CCDC14Q49A88 953 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 TRNP1Q6NT89 227 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 GPRIN1Q7Z2K8 1008 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 KATNAL2Q8IYT4 538 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 RNPC3Q96LT9 517 aaKnown RBP18.58■□□□□ 0.57
CLIP1-215ENST00000541108 CEP295NLQ96MC4 621 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 NAP1L3Q99457 506 aaPredicted RBP18.58■□□□□ 0.57
CLIP1-215ENST00000541108 DDX23Q9BUQ8 820 aaKnown RBP18.58■□□□□ 0.57
CLIP1-215ENST00000541108 ULBP1Q9BZM6 244 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 POPDC2Q9HBU9 364 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.58■□□□□ 0.57
CLIP1-215ENST00000541108 HSFX1Q9UBD0 423 aa18.58■□□□□ 0.57
CLIP1-215ENST00000541108 MTMR11A4FU01 709 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 KRT7P08729 469 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 MARCKSL1P49006 195 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 ARFGAP1Q8N6T3 406 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 ATAD1Q8NBU5 361 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 CENPIQ92674 756 aaPredicted RBP18.57■□□□□ 0.56
CLIP1-215ENST00000541108 FAM149B1Q96BN6 582 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 MS4A14Q96JA4 679 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 C11orf84Q9BUA3 381 aaPredicted RBP18.57■□□□□ 0.56
CLIP1-215ENST00000541108 TRIM62Q9BVG3 475 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 SSX2IPQ9Y2D8 614 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 NR2E3Q9Y5X4 410 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 PGRMC1O00264 195 aaKnown RBP18.57■□□□□ 0.56
CLIP1-215ENST00000541108 FGF18O76093 207 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 URODP06132 367 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 OR1D2P34982 312 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 NOS2P35228 1153 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 SSR1P43307 286 aaKnown RBP18.57■□□□□ 0.56
CLIP1-215ENST00000541108 ARPP19P56211 112 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 ROR1Q01973 937 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 SEL1L2Q5TEA6 688 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 DAB2IPQ5VWQ8 1189 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 TPGS2Q68CL5 300 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 RNF19BQ6ZMZ0 732 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 BEND5Q7L4P6 421 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 VPS52Q8N1B4 723 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 NUP93Q8N1F7 819 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 SPATA4Q8NEY3 305 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 EXD1Q8NHP7 514 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 ZNF461Q8TAF7 563 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 NT5C3BQ969T7 300 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 CFAP57Q96MR6 1250 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 PGLYRP2Q96PD5 576 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 SLC2A13Q96QE2 648 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 CLSTN3Q9BQT9 956 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLIP1-215ENST00000541108 DDX56Q9NY93 547 aaKnown RBP18.57■□□□□ 0.56
CLIP1-215ENST00000541108 RWDD3Q9Y3V2 267 aa18.57■□□□□ 0.56
CLIP1-215ENST00000541108 PATJQ8NI35 1801 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 KIAA1671Q9BY89 1806 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 WDR27A2RRH5 827 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 TADA3O75528 432 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 DAB1O75553 588 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 ABLIM3O94929 683 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 ZRANB2O95218 330 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLIP1-215ENST00000541108 USP17L7P0C7H9 530 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 PYGMP11217 842 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 SLC5A3P53794 718 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 SLC25A11Q02978 314 aaKnown RBP18.56■□□□□ 0.56
CLIP1-215ENST00000541108 CREMQ03060 361 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 SLC25A52Q3SY17 297 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 STRADAQ7RTN6 431 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 SCN4BQ8IWT1 228 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 SPATA17Q96L03 361 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 FBXO44Q9H4M3 255 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 MRPL17Q9NRX2 175 aaKnown RBP18.56■□□□□ 0.56
CLIP1-215ENST00000541108 RRN3Q9NYV6 651 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 STAP1Q9ULZ2 295 aa18.56■□□□□ 0.56
CLIP1-215ENST00000541108 YJEFN3A6XGL0 299 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 E7ENQ6 273 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 HAPLN1P10915 354 aaPredicted RBP18.55■□□□□ 0.56
CLIP1-215ENST00000541108 MIPP30301 263 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 TUFMP49411 452 aaKnown RBP18.55■□□□□ 0.56
CLIP1-215ENST00000541108 RABGGTBP53611 331 aa18.55■□□□□ 0.56
CLIP1-215ENST00000541108 RPL10AP62906 217 aaKnown RBP18.55■□□□□ 0.56
CLIP1-215ENST00000541108 COL13A1Q5TAT6 717 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms