RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 FBXO32Q969P5 355 aa18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 NXPE3Q969Y0 559 aa18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 DNAJC7Q99615 494 aa18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 AGPAT1Q99943 283 aa18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 GRPEL1Q9HAV7 217 aa18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 NOCTQ9UK39 431 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 STRIP2Q9ULQ0 834 aa18.45■□□□□ 0.54
CLSTN3-210ENST00000540931 SOAT2O75908 522 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 ADCY5O95622 1261 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 ZBED1O96006 694 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 GZMAP12544 262 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 MYL4P12829 197 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 GABRR2P28476 465 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 CDK17Q00537 523 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 ARID5AQ03989 594 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 CCDC142Q17RM4 750 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 PM20D1Q6GTS8 502 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 TMEM110Q86TL2 294 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 NOP9Q86U38 636 aaKnown RBP18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 UBA3Q8TBC4 463 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 LRRC3Q9BY71 257 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 ATXN3LQ9H3M9 355 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 SYNCQ9H7C4 482 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 ST7Q9NRC1 585 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 CLIC5Q9NZA1 410 aa18.44■□□□□ 0.54
CLSTN3-210ENST00000540931 HHLA1C9JL84 531 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 BEST1O76090 585 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 GLI1P08151 1106 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 RALAP11233 206 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 SCNN1AP37088 669 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 NSFP46459 744 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 TKTL1P51854 596 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 TBX2Q13207 712 aaPredicted RBP18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 CLUL1Q15846 466 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 TDRD12Q587J7 1177 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 TOGARAM2Q6ZUX3 1019 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 ERICH1Q86X53 443 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 TMC8Q8IU68 726 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 VCPIP1Q96JH7 1222 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 PPP1R13BQ96KQ4 1090 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 ZSWIM1Q9BR11 485 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 APOL5Q9BWW9 433 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 SLC4A5Q9BY07 1137 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 OLA1Q9NTK5 396 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 WDR35Q9P2L0 1181 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 CDH7Q9ULB5 785 aa18.43■□□□□ 0.54
CLSTN3-210ENST00000540931 SSU72P8A0A1W2PR75 194 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 MFAP3LO75121 409 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 F11P03951 625 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 CYP1A1P04798 512 aaPredicted RBP18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 PNMA6AP0CW24 399 aaPredicted RBP18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 GPR15P49685 360 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 CACNA2D1P54289 1103 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 GSDMDP57764 484 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 TAF10Q12962 218 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 PDCLQ13371 301 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 EFHC1Q5JVL4 640 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 PRSS36Q5K4E3 855 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 PMF1Q6P1K2 205 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 MTSS1LQ765P7 747 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 BEND5Q7L4P6 421 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 KIAA1958Q8N8K9 716 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 TRIM11Q96F44 468 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 HAUS4Q9H6D7 363 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 TASP1Q9H6P5 420 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 ABHD10Q9NUJ1 306 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 ASNSD1Q9NWL6 643 aa18.42■□□□□ 0.54
CLSTN3-210ENST00000540931 NRDCO43847 1150 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 CALB1P05937 261 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 MMEP08473 750 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 FMO1Q01740 532 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 SDHAF4Q5VUM1 108 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 TAF3Q5VWG9 929 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 DENND1BQ6P3S1 775 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 KLHDC10Q6PID8 442 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 GJD3Q8N144 294 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 TDRD5Q8NAT2 981 aaKnown RBP18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 GPR152Q8TDT2 470 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 C18orf8Q96DM3 657 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 PANX2Q96RD6 677 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 POMKQ9H5K3 350 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 SLITRK6Q9H5Y7 841 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 KIF9Q9HAQ2 790 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 IL21Q9HBE4 155 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 ACP6Q9NPH0 428 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 ABCC13Q9NSE7 274 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 TMEM30AQ9NV96 361 aa18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 SEPT11Q9NVA2 429 aaKnown RBP18.41■□□□□ 0.54
CLSTN3-210ENST00000540931 A0A1W2PRU2 124 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 ZNF840PA6NDX5 716 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 AP5Z1O43299 807 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 USP17L7P0C7H9 530 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 ZDHHC11BP0C7U3 371 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 GBP2P32456 591 aaPredicted RBP18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 AVPR1AP37288 418 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 GABRB2P47870 512 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 NOMO3P69849 1222 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 CENPCQ03188 943 aa18.4■□□□□ 0.54
CLSTN3-210ENST00000540931 GOLGA8FQ08AF8 430 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms